Locus 285

Sequence ID X_DroMel_CAF1
Location 958,036 – 958,144
Length 108
Max. P 0.983067
window433

overview

Window 3

Location 958,036 – 958,144
Length 108
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 79.57
Mean single sequence MFE -33.17
Consensus MFE -23.20
Energy contribution -24.46
Covariance contribution 1.26
Combinations/Pair 1.17
Mean z-score -2.45
Structure conservation index 0.70
SVM decision value 1.93
SVM RNA-class probability 0.983067
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 958036 108 + 22224390
AGGCCAAGCAUGACUGCCAUUCGAGAUGCCAGAUGCCAAUCUUGUAUCUUGUGGGUUGGGUUGGCUUCCCUAUUUUCGAGGAUUGCGAAUGCAUUUGGCAUUCUUUCC
(((((((.(......(((...((((((((.((((....)))).))))))))..)))..).))))))).(((.......))).....((((((.....))))))..... ( -35.90)
>DroSec_CAF1 40855 107 + 1
AGGCCAAGCAUGACUGCCAUCCGAGAUACCAGAUGCCAAUCUUGUAUCUUGUGGGUUGGGUUGGCUUCCCUAUUUUCGGGGAUUGCAAAUGCAU-UGGCAUUCUUUCC
..((((((((((((((((...((((((((.((((....)))).))))))))..)))..)))).((.(((((......)))))..))..)))).)-))))......... ( -40.20)
>DroEre_CAF1 49395 82 + 1
AGGCCAAGCAUGACUGCCAUUCGAGAU-------GCCAAUCUUGU------------GGAUUGGUUUCCCUAUUUUCGGGGAUUGC------AU-UGCCAUUCUUUUC
.(((...(((.((((.(((..((((((-------....)))))))------------))...))))(((((......))))).)))------..-.)))......... ( -23.40)
>consensus
AGGCCAAGCAUGACUGCCAUUCGAGAU_CCAGAUGCCAAUCUUGUAUCUUGUGGGUUGGGUUGGCUUCCCUAUUUUCGGGGAUUGC_AAUGCAU_UGGCAUUCUUUCC
..((((.((((...(((..(((((((........((((((((...(((.....))).))))))))........)))))))....))).))))...))))......... (-23.20 = -24.46 +   1.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:49 2006