Locus 2845

Sequence ID X_DroMel_CAF1
Location 7,597,096 – 7,597,192
Length 96
Max. P 0.906019
window4668

overview

Window 8

Location 7,597,096 – 7,597,192
Length 96
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 89.85
Mean single sequence MFE -37.35
Consensus MFE -27.55
Energy contribution -28.92
Covariance contribution 1.38
Combinations/Pair 1.06
Mean z-score -2.83
Structure conservation index 0.74
SVM decision value 1.04
SVM RNA-class probability 0.906019
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7597096 96 + 22224390
CGGCCG-----GGCAAAUGCUUCGAUUUAUUUGCCUCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUGAUGAUGCCGAUGAUGAUGACGGCGAUGGGGCG
..((((-----((((((((........)))))))))(((..((.((.(((((((((((((..((....))..).).)))))))))))...)))))))))). ( -37.00)
>DroSec_CAF1 14381 95 + 1
CGGCCG------GCAAAUGUUUCGAUUUAUUUGCCUCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUGAUGAUGCUGAUGAUGAUGACGGCGAUGGGGCG
..((((------(((((((........)))))))).(((..((.((.(((((((((((((..((....))..).)).))))))))))...)))))))))). ( -37.40)
>DroSim_CAF1 14950 96 + 1
CGGCCG-----GGCAAAUGUUUCGAUUUAUUUGCCUCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUGAUGAUGCUGAUGAUGAUGACGGCGAUGGGGCG
..((((-----((((((((........)))))))))(((..((.((.(((((((((((((..((....))..).)).))))))))))...)))))))))). ( -37.90)
>DroYak_CAF1 15693 95 + 1
CGGCCGGUUUCGGCAAAUGUUUCGAUUUAUUUGCGGCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUGUGGAUGAUGAUGAUGAUGAUG------GGGCG
.(((((....).(((((((........)))))))))))....((.(((((((((((((.(..(((.....)))..)))))))))))).))------.)).. ( -37.10)
>consensus
CGGCCG_____GGCAAAUGUUUCGAUUUAUUUGCCUCCAAAUCUGCACAUCGUCGUCGCUUGUCCAAUGAUGAUGCUGAUGAUGAUGACGGCGAUGGGGCG
..(((......((((((((........)))))))).(((...(((..(((((((((((((((((....))))).).))))))))))).)))...)))))). (-27.55 = -28.92 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:55 2006