Locus 2842

Sequence ID X_DroMel_CAF1
Location 7,575,225 – 7,575,345
Length 120
Max. P 0.922985
window4662

overview

Window 2

Location 7,575,225 – 7,575,345
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.41
Mean single sequence MFE -46.57
Consensus MFE -31.83
Energy contribution -32.92
Covariance contribution 1.09
Combinations/Pair 1.30
Mean z-score -2.11
Structure conservation index 0.68
SVM decision value 1.15
SVM RNA-class probability 0.922985
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7575225 120 + 22224390
GGAUCACGAUACCGCCACGCUCUCCUCACAUCACGGCACCUCGCAGAUCACCCUGGUCAGCGAUGAGGCGGAAACCUUCAUCCUGACCGCCUACGAGGAGGGCGUCUCGGAUGACACUGU
...........(((..(((((((((((..(((...((.....)).)))......((((((.(((((((.(....))))))))))))))......)))))))))))..))).......... ( -51.10)
>DroVir_CAF1 90721 114 + 1
GAACG---CAACGGCCAUGUCCUCCUCGCAUCAUGCCAGCUCGCAAAUAACGCUGGUC---GAUGAGACCGAGACAUUCAUAUUGACCGCCUACGAGGAGAGCGUGGCCGAUGAUACGGU
.....---((.((((((((..(((((((.....(((......)))......((.((((---((((.((.........)).))))))))))...)))))))..)))))))).))....... ( -45.10)
>DroGri_CAF1 10787 117 + 1
GGAUA---CAACGGCAUUGUCCUCCUCACAUCAUGCCAGCUCACAAAUAACGCUGGUCAGCGAUGAGGCCGAAACAUUCAUAUUGACCGCCUAUGAGGAGAGCGUUGCCGAUGAUACGGU
.....---((.(((((.((..(((((((((((.(((((((...........))))).))..))))((((.(...((.......)).).)))).)))))))..)).))))).))....... ( -42.40)
>DroEre_CAF1 14741 120 + 1
GGAUCAUGAUACCGCCACGCUUUCCUCGCAUCACGGCGCCUCGCAGAUCACGCUGGUCAGCGAUGAGGCGGAGACCUUUAUCCUCACCGCCUACGAGGAGGGCGUUUCGGAUGACACUGU
(..((((....(((..((((((((((((((((.(.(((...))).((((.....)))).).))))((((((.((.........)).)))))).))))))))))))..)))))))..)... ( -47.40)
>DroYak_CAF1 13502 120 + 1
GGAUCACGAUACCGCCACACUUUCCUCGCAUCACGGCGCCUCGCAGAUCACGCUGGUCAGCGAUGAGGCGGAGACCUUCAUCCUGACCGCCUACGAGGAGGGCGUUUCGGAUGACACUGU
..(((.(((...((((.....(((((((......(((.....((.......)).((((((.(((((((.(....)))))))))))))))))..)))))))))))..))))))........ ( -47.50)
>DroAna_CAF1 4909 120 + 1
GGAUCCGGACACGGCCACUGUCUCCUCCCACCACGGGGCCUCGCAGAUCACCUUGGUUAGCGAGGAGGCGGAGACCUUUAUCCUGACCGCCUACGAGGAGGGCGUAGCGGAUGACUCAGU
((..(((....)))))...((((((((((.....))))((((((.((((.....)))).))))))....))))))..((((((....(((((.......)))))....))))))...... ( -45.90)
>consensus
GGAUCA_GAUACCGCCACGCUCUCCUCGCAUCACGGCACCUCGCAGAUCACGCUGGUCAGCGAUGAGGCGGAGACCUUCAUCCUGACCGCCUACGAGGAGGGCGUUGCGGAUGACACUGU
...........(((..(((((((((((......((......))...........((((((.(((((((.(....))))))))))))))......)))))))))))..))).......... (-31.83 = -32.92 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:50 2006