| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,571,417 – 7,571,513 |
| Length | 96 |
| Max. P | 0.740047 |
| Location | 7,571,417 – 7,571,513 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 87.30 |
| Mean single sequence MFE | -29.91 |
| Consensus MFE | -21.19 |
| Energy contribution | -21.94 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.740047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7571417 96 + 22224390 AUUAUUUGCGCAAGCAUGCUAAUUGGGGAUUGCCAUCCGGUCGGCUGCUCCAGAGAAGUAUAUGAGGUAGCCACAUACAUGGCCUCCGAUCAUCAU ......(((....))).....(((((((...(((((...((.((((((..((..........))..))))))))....))))))))))))...... ( -31.50) >DroSec_CAF1 1337 96 + 1 AUGAUUUGCGCAUGCAUGCUAAUUGGGGACUGCCAUCCCGUCCGCUGCUUCAGAGAAGUAUAUGAGGUAGCCACAUACAUGGCCUCCGAGCAUCAU ((((..((((((....)))...((((((...(((((.......(((((((((..........))))))))).......)))))))))))))))))) ( -29.94) >DroEre_CAF1 10904 95 + 1 AUGAUUUUCGCAUGCUUGCUAAUUGGGGAUUGCCAUUCCGUCGGCUGCU-CAGAGAAGUAUAAAAGGUAGCCACAUAAAUGGCCCCCGAUCAUCAU (((((..(((((....))).....((((...((((((..((.(((((((-...............)))))))))...))))))))))))..))))) ( -31.16) >DroYak_CAF1 9506 95 + 1 AUGAUUUGCGCAUGCAUGCUAAUUGGGGAUUGCCAUCCCGCCGGCCGCU-CAAAAAAGUAUAGAAGGUGGCCACAUAAAUGAACCCCGCUCAUCAU (((((..(((((....))).....((((...((......)).(((((((-...............)))))))...........))))))..))))) ( -27.06) >consensus AUGAUUUGCGCAUGCAUGCUAAUUGGGGAUUGCCAUCCCGUCGGCUGCU_CAGAGAAGUAUAUAAGGUAGCCACAUAAAUGGCCCCCGAUCAUCAU (((((..(((((....))).....((((...(((((......(((((((................)))))))......)))))))))))..))))) (-21.19 = -21.94 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:47 2006