| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 956,963 – 957,054 |
| Length | 91 |
| Max. P | 0.865272 |
| Location | 956,963 – 957,054 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 86.01 |
| Mean single sequence MFE | -22.63 |
| Consensus MFE | -18.17 |
| Energy contribution | -17.73 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.865272 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 956963 91 + 22224390 CGAUAUCGAAACGUGGGAAGCAACCACGAGCAAAUCUAUCAGAUAUACAAAAU--------UAUAUGGGCAACAUGGUGGUAUUUUCCCAUCGCCCAUA ..(((((....(((((.......)))))((.....))....))))).......--------..(((((((...((((.((.....)))))).))))))) ( -23.40) >DroEre_CAF1 48323 88 + 1 CGAUAUCGAAACGUGGGAAGAAACCACGAGCAAAUCUAUCAGAUAUACAACAU--------GAUGUGGGCCAG---AUGAUAUUUUCCCAUCGCCCAUA ..((((((...(((((.......))))).....(((.....)))........)--------)))))((((..(---(((.........))))))))... ( -21.70) >DroYak_CAF1 42917 96 + 1 CGAUAUCGAAACGUGGGAAGAAACCACGAGCAAAUCUAUCAGAUAUACAAAAAUAUACGAGUAUAUGGGCAAG---AUGAUAUUUUCCCAUCGCCCAUA .....(((...(((((.......))))).....(((.....))).............)))...(((((((..(---(((.........))))))))))) ( -22.80) >consensus CGAUAUCGAAACGUGGGAAGAAACCACGAGCAAAUCUAUCAGAUAUACAAAAU________UAUAUGGGCAAG___AUGAUAUUUUCCCAUCGCCCAUA ..(((((....(((((.......)))))((.....))....))))).................(((((((......(((.........))).))))))) (-18.17 = -17.73 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:48 2006