Locus 2839

Sequence ID X_DroMel_CAF1
Location 7,569,523 – 7,569,629
Length 106
Max. P 0.920312
window4658

overview

Window 8

Location 7,569,523 – 7,569,629
Length 106
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 86.96
Mean single sequence MFE -27.04
Consensus MFE -22.09
Energy contribution -24.76
Covariance contribution 2.67
Combinations/Pair 1.00
Mean z-score -2.69
Structure conservation index 0.82
SVM decision value 1.13
SVM RNA-class probability 0.920312
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7569523 106 - 22224390
UAAUAUAAAUAGCUUAAGACACCAAUUAUCGCGACUGGAUU---------UCUCAAAAAUAAAAAAAAGCAGGAUCUAAUGCAAAAUCGAGUCGUGAUUUGGCUGCAUUAUAUAA
..((((((.(((((.............(((((((((.((((---------(.................(((........))).))))).)))))))))..)))))..)))))).. ( -22.23)
>DroSec_CAF1 61926 115 - 1
UAAUAUAAAUUCCUUAAGACUCCAAUGAUCGCGACUGGAUUUUGGGGGUUUCUCAAAGAAAAAAAAAAGCAGGAUCUAAUGCAAAAUCGAGUCGUGAUAUGGCUGCUUUAUAUAA
...............(((...(((...(((((((((.((((((.(((....)))..............(((........))))))))).))))))))).)))...)))....... ( -27.70)
>DroSim_CAF1 55741 113 - 1
UAAUAUAAAUAGCUUUAGACUCUAAUGAUCGCGACUGGAUUUUGGGGGUUUCUCAAAUAAA--AAAAGGCAGGAUCUAAUGCAAAAUCGAGUCGUGAUAUGGCUGCUUUAUAUAA
..((((((((((((((((...))))..(((((((((.((((((.(((....))).......--.....(((........))))))))).)))))))))..))))).))))))).. ( -31.20)
>consensus
UAAUAUAAAUAGCUUAAGACUCCAAUGAUCGCGACUGGAUUUUGGGGGUUUCUCAAAAAAAAAAAAAAGCAGGAUCUAAUGCAAAAUCGAGUCGUGAUAUGGCUGCUUUAUAUAA
..((((((((((((.............(((((((((.((((((.(((....)))..............(((........))))))))).)))))))))..))))).))))))).. (-22.09 = -24.76 +   2.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:46 2006