Locus 2837

Sequence ID X_DroMel_CAF1
Location 7,566,974 – 7,567,065
Length 91
Max. P 0.722592
window4655

overview

Window 5

Location 7,566,974 – 7,567,065
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 89.01
Mean single sequence MFE -15.63
Consensus MFE -13.19
Energy contribution -13.97
Covariance contribution 0.78
Combinations/Pair 1.06
Mean z-score -2.06
Structure conservation index 0.84
SVM decision value 0.40
SVM RNA-class probability 0.722592
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7566974 91 + 22224390
AGAGGUGCUCUAAAAGGGAGGAGCUAUAAUCGCAAAAUAAAUUGUCAUUGUUUCCACAGUCAUAACAAAGAAAUGAAUAACAAAGGAAAGA
..((.(.((((.....)))).).)).((((.((((......)))).))))(((((....((((.........))))........))))).. ( -11.80)
>DroSec_CAF1 59379 91 + 1
AGAGGUUCUUUAAAAGGGAGGAGCUAUUAUCGAAAAAUAAAUUGUGAUUGUUUUCACAGUCAUAACAAUGAAAAGAAUAAAAAAGCGAAGU
...((((((((......))))))))................((((((((((....)))))))))).......................... ( -16.20)
>DroSim_CAF1 53461 90 + 1
AGAGGUUCCUUAAAAGGGAGGAGCUAUUAACGAAAAAUAAAUUGUGAUUGUUUUCACAGUCAUAACAAUGAAAAGAA-AAAAAAGCGAAGU
...((((((((......))))))))................((((((((((....))))))))))............-............. ( -18.90)
>consensus
AGAGGUUCUUUAAAAGGGAGGAGCUAUUAUCGAAAAAUAAAUUGUGAUUGUUUUCACAGUCAUAACAAUGAAAAGAAUAAAAAAGCGAAGU
...((((((((......))))))))................((((((((((....)))))))))).......................... (-13.19 = -13.97 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:44 2006