| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,563,485 – 7,563,576 |
| Length | 91 |
| Max. P | 0.663629 |
| Location | 7,563,485 – 7,563,576 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 94.51 |
| Mean single sequence MFE | -23.62 |
| Consensus MFE | -19.41 |
| Energy contribution | -19.48 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663629 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7563485 91 + 22224390 AAGAAAGGUAAAAAGUUUUCAAAAAGACGACCAAAACUAGAGCGAGACGUAAGCUCAUUGGUCUAUGGGUUGAUCGCUUCCGGUUGGUGCA ..(((((.(....).))))).........(((((.....((((((......(((((((......)))))))..))))))....)))))... ( -21.30) >DroSec_CAF1 55876 91 + 1 AAGAAAGGUAAAAAGUUUUCAAAAAGAGGACCAAAACUAGAGCGAGACGUAAGCUCAUUGGUCUAUGGGUUGAUCGCUUCCGGUUGGUGCA ..(((((.(....).))))).......(.(((((.....((((((......(((((((......)))))))..))))))....))))).). ( -23.60) >DroSim_CAF1 49613 91 + 1 AAGAAAGGUAAAAAGUUUUCAAAAAGAGGACCAAAACUAGAGCGAGACGUAAGCUCAUUGGUCUAUGGGUUGAUCGCUUCCGGUUGGUGCA ..(((((.(....).))))).......(.(((((.....((((((......(((((((......)))))))..))))))....))))).). ( -23.60) >DroYak_CAF1 57840 89 + 1 AAGAAAGGUAAAAACUUUUCAAAUGGAGCACCAAAACUAGAGCGAGACGUAAGCUUAUUGGUCUAUGGUUUGAUCGCUUGCGGUUGGUG-- ..(((((((....)))))))........((((((.....((((((..((((..((....))..))))......))))))....))))))-- ( -26.00) >consensus AAGAAAGGUAAAAAGUUUUCAAAAAGAGGACCAAAACUAGAGCGAGACGUAAGCUCAUUGGUCUAUGGGUUGAUCGCUUCCGGUUGGUGCA ..(((((........))))).........(((((.....((((((......(((((((......)))))))..))))))....)))))... (-19.41 = -19.48 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:42 2006