Locus 2832

Sequence ID X_DroMel_CAF1
Location 7,560,161 – 7,560,273
Length 112
Max. P 0.929403
window4650

overview

Window 0

Location 7,560,161 – 7,560,273
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.50
Mean single sequence MFE -30.32
Consensus MFE -8.96
Energy contribution -10.04
Covariance contribution 1.08
Combinations/Pair 1.12
Mean z-score -2.09
Structure conservation index 0.30
SVM decision value 1.20
SVM RNA-class probability 0.929403
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7560161 112 - 22224390
CUAUGCAAAUUU-CAUUUGUU---UUUUGGGUGCUGGGCACAGAUGUUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCA----GCUGUGGAACAAUGGAUUUGAUGCACA
...((((...((-((((.(((---(..(((.(((((....)....((..(((.....(((((((.......))))))))))..))))))----.)))..)))))))))).....)))).. ( -29.00)
>DroPse_CAF1 117146 103 - 1
CUAUGCAAAUUUUCAAAUGCUCC----------CCUUGCACAGAUGUUGGCUUAAUAAAGUUAUAACAAAGGUGU-------UCCGGCACCCAUCUAGGGGACAAUGGAAAUGAUGGACA
((((....(((((((..((.(((----------(((.....(((((.((((((....)))))).......(((((-------....)))))))))))))))))).))))))).))))... ( -27.80)
>DroSec_CAF1 52587 111 - 1
CUAUGCAAAUUU-CAUUUGUU---U-UUGGGUGCUGGCCACAGAUGUUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCA----GCUGUGGUACAAUGGAUUUGAUGCACA
(((.((((((..-.)))))).---.-.)))((((..(((((((.(((..(((.....(((((((.......))))))))))..)))...----.))))))).(((.....)))..)))). ( -33.30)
>DroEre_CAF1 64162 115 - 1
CUAUGCAAAUUU-CGUUUGUUGUGUUUUGGGGACUGGGCACAGAUGCUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCA----GCUGUGCAACAUUGGAUUUGAUGCACA
....((((((..-.))))))(((((.(..((..(...((((((.((((((((.....(((((((.......))))))))))...)))))----.))))))......)..))..).))))) ( -31.30)
>DroYak_CAF1 54240 94 - 1
CUAUGCAAAUUU-CAC---------------------ACACAGCUGUUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCA----GAUGUGGCAGCAUGGAGUUGUUGCACA
............-..(---------------------((((.(((((..(((.....(((((((.......))))))))))..))))).----).))))((((((......))))))... ( -30.20)
>consensus
CUAUGCAAAUUU_CAUUUGUU___U_UUGGG__CUGGGCACAGAUGUUGGCUUAAUAAAGUUAUAAUAAAGGUAGCUUAGCUGACGGCA____GCUGUGGAACAAUGGAUUUGAUGCACA
......................................(((((.(((((........(((((((.......)))))))......))))).....)))))..................... ( -8.96 = -10.04 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:39 2006