Locus 2830

Sequence ID X_DroMel_CAF1
Location 7,558,194 – 7,558,308
Length 114
Max. P 0.799110
window4643

overview

Window 3

Location 7,558,194 – 7,558,308
Length 114
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 80.34
Mean single sequence MFE -47.80
Consensus MFE -31.05
Energy contribution -29.83
Covariance contribution -1.22
Combinations/Pair 1.40
Mean z-score -1.89
Structure conservation index 0.65
SVM decision value 0.61
SVM RNA-class probability 0.799110
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7558194 114 - 22224390
GUCAGGAUAUCGAUGCCAAGUCGGAAUCGGCAUCGGUUAGUGCCUCACUUUCGGCACCCGAUCUUUGCGAUGAAGAUUCACUGGAACGAAAUUCCAGUGAUACGGGUGCCGGUU
((.(((..(((((((((...........))))))))).....))).))..((((((((((((((((.....))))))(((((((((.....)))))))))..)))))))))).. ( -53.40)
>DroPse_CAF1 115020 113 - 1
-CCAGGACAUGGACGCCAGGUCGGAGUCGGCCUCGGUCACGGCCUCCGUGUCCGCUCCCGAUCUCUGCGACGAGGACUCGUUGGGACGUGGCUCGAACGACACCACCGCCGGCC
-((.((...(((..((((.(((((((((((...(((.(((((...))))).)))...)))).)))).((((((....)))))).))).))))((....))..)))...)))).. ( -47.40)
>DroSec_CAF1 50670 114 - 1
GCCAGGAUACCGAUGCCAAGUCGGAAUCGGCAUCGGUUAGUGCCUCACUUUCGGCACCCGAUCUCUGCGAUGAAGAUUCACUGGGACGAAAUUCCAGUGACACGGGCGCCGGUU
((((((..(((((((((...........))))))))).....))).......(((.(((((((((......).))))(((((((((.....)))))))))..)))).)))))). ( -48.20)
>DroEre_CAF1 62180 114 - 1
GCCAAGAUACCGAUGCCAAAUCGGAAUCGGCAUCGGUGAGUGCCUCACUUUCAGCACCCGAUCUUUGCGAUGAGGAUUCGCUGGGACGAAAUUCUAGUGACAUGGGCGCCGGCU
(((....((((((((((...........)))))))))).((((((..(((...(((.........)))...)))...(((((((((.....)))))))))...)))))).))). ( -43.50)
>DroYak_CAF1 52136 114 - 1
GCCAGGACACCGAUGCCAAGUCGGAAUCGGCAUCGGUAAGUGCCUCACUUUCGGCACCCGAUCUCUGCGAUGACGAUUCGCUGGGACGCAACUCCAGUGACACGGGCGCCGGUU
(((((((((((((((((...........)))))))))..)).))).......(((.(((((((((......)).)))((((((((.......))))))))..)))).)))))). ( -46.70)
>DroPer_CAF1 121135 113 - 1
-CCAGGACAUGGACGCCAGGUCAGAGUCGGCCUCGGUCACGGCCUCCGUGUCCGCUCCCGAUCUGUGCGACGAGGACUCGUUGGGACGCGGCUCGAACGACACCACCGCCGGCC
-...(((((((((.((((((((......))))).(....)))).)))))))))(((((((((..((.(.....).))..))))))).))(((.((..((.......)).))))) ( -47.60)
>consensus
GCCAGGACACCGAUGCCAAGUCGGAAUCGGCAUCGGUCAGUGCCUCACUUUCGGCACCCGAUCUCUGCGAUGAGGAUUCGCUGGGACGAAACUCCAGUGACACGGGCGCCGGCU
(((..(((.(((((.....))))).)))(((.((((...((((..........))))))))................((((((((.......)))))))).......)))))). (-31.05 = -29.83 +  -1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:33 2006