Locus 2829

Sequence ID X_DroMel_CAF1
Location 7,557,205 – 7,557,303
Length 98
Max. P 0.683072
window4642

overview

Window 2

Location 7,557,205 – 7,557,303
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.68
Mean single sequence MFE -21.80
Consensus MFE -15.66
Energy contribution -15.33
Covariance contribution -0.33
Combinations/Pair 1.11
Mean z-score -1.85
Structure conservation index 0.72
SVM decision value 0.31
SVM RNA-class probability 0.683072
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7557205 98 - 22224390
UUAUCAAACGUAUGGAUUUUCAUGAGUUUGCAAAU-UUCUGCAC---------------AUUGAGGCAGAAAAAGUGCACUGAAAGCCAAUCAAAGCAGCAGUAACAAAAC------AAA
.....((((.(((((....))))).))))(((..(-((((((..---------------......)))))))...)))((((...((........))..))))........------... ( -20.50)
>DroPse_CAF1 113207 114 - 1
UUAUCAAACGUAUGGAUAUCCAUGAGUUUGCAAAUUUUCUGUACACAACCGAUCAAUGCACUGAGGCAGAAAAACUGCAAUGGAAGCCAAUCGCAGGAGCAGAAACAAAGC------AAA
....(((((.(((((....))))).))))).....(((((((.(............(((......)))......((((..(((...)))...))))).)))))))......------... ( -24.80)
>DroSec_CAF1 49701 98 - 1
UUAUCAAACGUAUGGAUUUUCAUGAGUUUGCAAAU-UUCUGCAC---------------AUUGAGGCAGAAAAAGUGCACUGAAAGCCAAUCAAAGCAGCAAUAACAAAAC------AAA
............(((.((((((.(....((((..(-((((((..---------------......)))))))...))))))))))))))......................------... ( -18.40)
>DroEre_CAF1 61172 98 - 1
UUAUCAAAUGUAUGGAUUUUCAUGAGUUUGCAAAU-UUCUGCAC---------------AUUGAGGCAGAAAAAGUGCACUGAAAGCCAAUCAAAGCAGCAGUAACGAUAC------AAA
........(((((.(..............(((..(-((((((..---------------......)))))))...)))((((...((........))..))))..).))))------).. ( -22.00)
>DroYak_CAF1 51220 104 - 1
UUAUCAAACGUGUGGAUUUUCAUGAGUUUGCAAAU-UUCUGCAC---------------AUUGAGGCAGAAAAAGUGCACUGAAAGCCAAUCAAAGCAGCAGUAACAAUACAACAACAAA
..........((..(((((....)))))..))..(-((((((..---------------......)))))))..((..((((...((........))..)))).)).............. ( -20.50)
>DroPer_CAF1 119268 113 - 1
UUAUCAAACGUAUGGAUAUCCAUGAGUUUGCAAAU-UUCUGUACACAACCGAUCAAUGCACUGAGGCAGAAAAACUGCAAUGGAAGCCAAUCGCAGGAACAGAAACAAAGC------AAA
....(((((.(((((....))))).)))))....(-((((((.(............(((......)))......((((..(((...)))...))))).)))))))......------... ( -24.60)
>consensus
UUAUCAAACGUAUGGAUUUUCAUGAGUUUGCAAAU_UUCUGCAC_______________AUUGAGGCAGAAAAAGUGCACUGAAAGCCAAUCAAAGCAGCAGUAACAAAAC______AAA
............(((.((((((......((((....((((((.......................))))))....)))).)))))))))............................... (-15.66 = -15.33 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:32 2006