Locus 2827

Sequence ID X_DroMel_CAF1
Location 7,553,772 – 7,553,870
Length 98
Max. P 0.998556
window4639

overview

Window 9

Location 7,553,772 – 7,553,870
Length 98
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 69.87
Mean single sequence MFE -23.75
Consensus MFE -12.55
Energy contribution -13.30
Covariance contribution 0.75
Combinations/Pair 1.26
Mean z-score -2.65
Structure conservation index 0.53
SVM decision value 3.14
SVM RNA-class probability 0.998556
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7553772 98 + 22224390
----CUAUACCUUCUGGUUGGAUAAGUCUUUAAGACACUUUUGACCUUGAGUGGGAAAAUUCCAAUGUG----UAGUUGGAAAAUAGGAUAUCUAUCCUAUC------CUAC--------
----........((.(((..((...(((.....)))...))..)))..))((((((...(((((((...----..)))))))..((((((....))))))))------))))-------- ( -29.60)
>DroSec_CAF1 46329 89 + 1
AGAACUAUACCUUCUGGUUGGAUAUGUCUUUAAGACACUUUUGACCUUGAGUGGAAAAAUCCCAAUGUG----UUGUUGGUA------------AUCCUA-C------CUAA--------
..(((.(((((((..(((..((..((((.....))))..))..)))..)))(((.......)))..)))----).)))((((------------....))-)------)...-------- ( -22.30)
>DroEre_CAF1 57661 92 + 1
----CUAUAACUUAUGGUUGGAUAAGUCUUUAAGAUAAUUCUGACCAUAACUCGGAAAAUACCAAUAUGUGCAUAGUUGGUAAU---------AACCCUA-A------CUAA--------
----.......(((((((..((...(((.....)))...))..)))))))...((....(((((((.........)))))))..---------..))...-.------....-------- ( -20.80)
>DroYak_CAF1 47527 102 + 1
----CUAUAACUUAUGGUUGGAUAAAUCUUUAAGAUAACUCUGACCUUGAGUAGGAAAAUCCCAAAGUG----UAAUUAGUAAU---------UAUCCUA-AAAGUUACUAAGUUUGGUA
----.....(((((.(((..((...(((.....)))...))..))).))))).........(((((...----...((((((((---------(......-..))))))))).))))).. ( -22.30)
>consensus
____CUAUAACUUAUGGUUGGAUAAGUCUUUAAGACAAUUCUGACCUUGAGUGGGAAAAUCCCAAUGUG____UAGUUGGUAAU_________UAUCCUA_A______CUAA________
..........((((.(((..((...(((.....)))...))..))).))))........(((((((.........)))))))...................................... (-12.55 = -13.30 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:29 2006