Locus 2826

Sequence ID X_DroMel_CAF1
Location 7,553,168 – 7,553,259
Length 91
Max. P 0.566983
window4638

overview

Window 8

Location 7,553,168 – 7,553,259
Length 91
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 78.62
Mean single sequence MFE -20.26
Consensus MFE -11.86
Energy contribution -12.26
Covariance contribution 0.40
Combinations/Pair 1.30
Mean z-score -1.73
Structure conservation index 0.59
SVM decision value 0.07
SVM RNA-class probability 0.566983
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7553168 91 + 22224390
CAAACACACAC--ACGGACACACAUAAAAGCCGCAGGUAU---ACAUAUCUGUAUCUGAGUGUGGAGUAUGUUUGUAUAAUCAUGUGAUACCAAAA
....((((...--....(((.(((((...(((.(((((((---(......)))))))).).))....))))).))).......))))......... ( -19.94)
>DroSec_CAF1 45749 94 + 1
CAAACACACAC--ACGCACACACAUACAAGCCGCAGGUAUACUACAUAUCUGUAUCUGAGUGUGGAGUAUGUUUGUAUAAUCAUGUGAUACCAAAA
.....(((.((--(..(.(((((.....((..((((((((.....))))))))..))..)))))..)..))).)))...(((....)))....... ( -20.30)
>DroSim_CAF1 45053 94 + 1
CAAACACACAC--ACGCACACACAUACAAGCCGCAGGUAUACUACAUAUCUGUAUUAAGUUGUGGAGUAUGUUUGUAUAAUCAUGUGAUACCAAAA
....((((...--....(((.((((((...((((((.(.((.((((....)))).))).)))))).)))))).))).......))))......... ( -20.94)
>DroEre_CAF1 57067 89 + 1
CAAACACACACACACGUACACGCAUACAAGCCGCAGGUAU-------AUCUGUAUCUGAGUGUGGAGUAUGUCUGUAUAAUCAUGUGAUACCAAAA
......((((.....(((((.((((((..(((.(((((((-------....))))))).).))...)))))).))))).....))))......... ( -23.50)
>DroAna_CAF1 50080 82 + 1
-------------GCGCACACACACUGCCGCGGAAGGUG-ACUGUAUACCUGCGUGUAUGUUUGGGAUAUGUUUGUAUAAUCAUGUGAUACCAAAA
-------------.((((((.(((.((((((((.((...-.))......))))).)))))).)).(((.(((....)))))).))))......... ( -16.60)
>consensus
CAAACACACAC__ACGCACACACAUACAAGCCGCAGGUAUACUACAUAUCUGUAUCUGAGUGUGGAGUAUGUUUGUAUAAUCAUGUGAUACCAAAA
................(((((((((.......((((((((.....))))))))......)))))((.((((....)))).)).))))......... (-11.86 = -12.26 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:28 2006