| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,550,950 – 7,551,043 |
| Length | 93 |
| Max. P | 0.828698 |
| Location | 7,550,950 – 7,551,043 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.39 |
| Mean single sequence MFE | -24.79 |
| Consensus MFE | -14.27 |
| Energy contribution | -15.05 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.828698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7550950 93 + 22224390 --------UUCGUCGCAUUUACAUAAAUGAU------------ACACACUGUAUUAAGCCGCUUCUGUGUGGGUGAACAUA--UGUCACACGCAGCGGCGAAAAAGUCAAUCACA- --------((((((((...........((((------------((.....))))))..((((......))))((((.(...--.))))).....)))))))).............- ( -24.70) >DroSec_CAF1 43585 93 + 1 --------UUCGUCGCAUUUACAUAAAUGCU------------ACACACUGUAUUAAACCGCUUCUGUGUGGGUGAACAUA--UGUCACACGCAGCGGCGAAAAAGUCAAUCACA- --------((((((((((((....)))))).------------.....((((......((((......))))((((.(...--.)))))..)))).)))))).............- ( -24.30) >DroSim_CAF1 42892 93 + 1 --------UUCGUCGCAUUUACAUAAAUUCU------------ACACACUGUAUUAAACCGCUUCUGUGUGGGUGAACAUA--UGUCACACGCAGCGGCGAAAAAGUCAAUCACA- --------((((((((.............((------------(((((..((........))...)))))))((((.(...--.))))).....)))))))).............- ( -24.10) >DroEre_CAF1 54852 78 + 1 --------------GCAUUUACAUAAAU----------------------GUAUUAAAAUGCUUCUGUGUGGGUUAACAUA--UGUCACACACAGCGGCGAAAAAGUCAAUCACAU --------------((((((....))))----------------------)).......((((.(((((((..........--.....))))))).))))................ ( -17.26) >DroYak_CAF1 44679 94 + 1 --------UUCAUCGCAUUUACAUAAAUGCU------------ACACACUGUAUUAAACUGCUUCUGUGUGGGUGAACAUA--UGUCACACGCAGCGGCGAAAAAGUCAAUCACAU --------(((...((((((....)))))).------------.................(((.((((((((..(......--)..).))))))).)))))).............. ( -20.40) >DroPer_CAF1 110677 116 + 1 UUCUUUCAUUCUUCGCAUUUACAUAAAUGUGCUACGUUGUUCCGUGCGCUGUGGAGCGACGCGUCCGUGUGGGUGCACACAUGUGUCGCGAGGAGAGGCGAAAAAGUCAAUCACAC ........((((((((.((((((.....((((.(((......)))))))))))))..(((((((..(((((....)))))))))))))))))))).(((......)))........ ( -38.00) >consensus ________UUCGUCGCAUUUACAUAAAUGCU____________ACACACUGUAUUAAACCGCUUCUGUGUGGGUGAACAUA__UGUCACACGCAGCGGCGAAAAAGUCAAUCACA_ ..............((((((....)))))).............................((((.((((((..(((.(((....)))))))))))).))))................ (-14.27 = -15.05 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:25 2006