Locus 2820

Sequence ID X_DroMel_CAF1
Location 7,545,686 – 7,545,804
Length 118
Max. P 0.552898
window4630

overview

Window 0

Location 7,545,686 – 7,545,804
Length 118
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 90.49
Mean single sequence MFE -34.92
Consensus MFE -30.10
Energy contribution -30.10
Covariance contribution -0.00
Combinations/Pair 1.06
Mean z-score -1.26
Structure conservation index 0.86
SVM decision value 0.04
SVM RNA-class probability 0.552898
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7545686 118 + 22224390
-UUUCAAGCGAGUGCCCACUGUGCGCCAAACAGUGCGUGCUGGCGAAUGGUUAGCAAUGGGAUGAAAACUUUCGACAAACACUGUGCUCGUUUGUUUGUUUGUUUGACACACUCGUACA
-......(((((((((((....((((......)))).(((((((.....))))))).))))..........((((((((((....((......)).)))))).))))..)))))))... ( -35.90)
>DroSec_CAF1 38762 117 + 1
-UUUCAAGCGAGUGUCCACUGUG-ACCAAACAGUGCGUGCUGGCGAAUGGUUAGCAAUGGGAUGAAAACUUUCGACAAACACUGUGCUCGUUUGUUUGUUUUUUUGGCACACUCGUACA
-......(((((((((((((((.-.....)))))...(((((((.....))))))).......((((((....(((((((.........))))))).))))))..)).))))))))... ( -35.60)
>DroSim_CAF1 39152 117 + 1
-UUUCAAGCGAGUGACCACUGUG-ACCAAACAGUGCGUGCUGGCGAAUGGUUAGCAAUGGGAUGAAAACUUUCGACAAACACUGUGCUCGUUUGUUUGUUUGUUUGGCACACUCGUACA
-......(((((((((((((((.-.....)))))).))((..(((((.((((..((......))..))))))))(((((((....((......)).))))))))..)).)))))))... ( -35.20)
>DroEre_CAF1 49697 115 + 1
-UUUCCAACGAGUGUUCACUGUA-GCGCAACAGUGCGUGCUGGCAAAUGGUUAGCAAUGUGAUGAAAACUUUUGACAAACACUGCGCUCAUUUGUUUGUUUGUUUGC--CGCUCGUACA
-......(((((((.((((....-((((....)))).(((((((.....)))))))..))))...........((((((((..(((......))).))))))))...--)))))))... ( -33.80)
>DroYak_CAF1 39534 118 + 1
GUUUCAAGCGAGUGCUCACUGUA-AGCGAUCAGUGCGUGCUGGCAAAUGGUUAGCAAUGGGAUGAAAACUUUUGACAAACACUGCGCUCGUUUGUUUGUUUGUUUGGCACGCUCGUACA
.......(((((((((.......-))).....((((.(((((((.....))))))).........((((....((((((((..((....)).)))))))).)))).))))))))))... ( -34.10)
>consensus
_UUUCAAGCGAGUGCCCACUGUG_ACCAAACAGUGCGUGCUGGCGAAUGGUUAGCAAUGGGAUGAAAACUUUCGACAAACACUGUGCUCGUUUGUUUGUUUGUUUGGCACACUCGUACA
.......(((((((..((((((.......))))))..(((((((.....))))))).........((((....((((((((...........)))))))).))))....)))))))... (-30.10 = -30.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:21 2006