Locus 2816

Sequence ID X_DroMel_CAF1
Location 7,536,980 – 7,537,086
Length 106
Max. P 0.887470
window4622

overview

Window 2

Location 7,536,980 – 7,537,086
Length 106
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 81.69
Mean single sequence MFE -22.01
Consensus MFE -15.56
Energy contribution -16.36
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.71
SVM decision value 0.95
SVM RNA-class probability 0.887470
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7536980 106 - 22224390
UUCUGCCUCUUCUUG------UUCUCUUUUCCUCUCCG--CC-----CUGUCUCUUUGCCCCUUCUUUUUCCAUACGUUUUGCACAUGCAAAACAAUGGGUAAUAAUCAGGUAGGUUAG
...............------..........((..((.--.(-----(((.....((((((.((............(((((((....))))))))).))))))....))))..))..)) ( -21.80)
>DroSec_CAF1 30139 107 - 1
UUCUGCCUCUCCUCG------UUCUCUUUCCCGCCCCG--CCC----CUGUCUCUUUGCCCUUCCUUUUGCCAUACGUUUUGCACAUGCAAAACAAUGGGUAAUAAUCAGGUAGGUUAG
...............------..............((.--..(----(((.....((((((........(.....)(((((((....)))))))...))))))....))))..)).... ( -21.70)
>DroSim_CAF1 30488 107 - 1
UUCUGCCUCUCCUCG------UUCUCUUUCCCGCCCCG--CCC----CUGUCUCUUUGCCCUUCCUUUUGCCAUACGUUUUGCACAUGCAAAACAAUGGGUAAUAAUCAGGUAGGUUAG
...............------..............((.--..(----(((.....((((((........(.....)(((((((....)))))))...))))))....))))..)).... ( -21.70)
>DroEre_CAF1 40731 99 - 1
CUCUGCCUCU-----------UUCUCU---CCCCUCCCUGUCUCGCGUUGCC------CCCUCCCUCUUGCCAUACCUUUUGCACAUGCAAAACAAUGGGUAAUAAUCAGGUAGGUUAG
..........-----------....((---..(((.((((......((((((------(.....(....).......((((((....))))))....)))))))...)))).)))..)) ( -19.70)
>DroYak_CAF1 30817 119 - 1
UUCUGCCUCUCCUCGUUCUCGUUCUCUUUCCCUCCCCCUUCCCCUCGUUGUCUCUUUGCCUUCCCUCUUGGCAUACGUUUUGCACAUGCAAAACAAUGGGUAAUAAUCAGGUAGGUUAG
.(((((((.........((((((.................................((((.........))))...(((((((....)))))))))))))........))))))).... ( -25.13)
>consensus
UUCUGCCUCUCCUCG______UUCUCUUUCCCGCCCCG__CCC____CUGUCUCUUUGCCCUUCCUUUUGCCAUACGUUUUGCACAUGCAAAACAAUGGGUAAUAAUCAGGUAGGUUAG
.(((((((.........................................((......))........(((((....(((((((....)))))))....))))).....))))))).... (-15.56 = -16.36 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:14 2006