| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,526,069 – 7,526,161 |
| Length | 92 |
| Max. P | 0.942492 |
| Location | 7,526,069 – 7,526,161 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 75.72 |
| Mean single sequence MFE | -23.03 |
| Consensus MFE | -18.24 |
| Energy contribution | -19.03 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.942492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7526069 92 - 22224390 ACAGAUCCUUUGCGCUGGUGCGCAGGCGGCUUAAAGUGCUCCAAAAGUGUUUAAUAAUUGUUAAAAAGGUGUGCGCAAGAUACCAAAGGGAA .....((((((((((....)))).((.(((.......))))).......((((((....))))))..(((((.(....)))))).)))))). ( -25.60) >DroSec_CAF1 19969 92 - 1 ACAGAUCCUUUGCGCUGGUGCGCAGGCGGCUUAAAGUGCCCCAAAAGUGUUUAAUAAUAGUUAGAAAGGUGUUCACGAGAUACCAAAGGAAA .....((((((((((....)))).((.(((.......))))).......((((((....))))))..((((((.....)))))))))))).. ( -26.70) >DroEre_CAF1 30092 80 - 1 -----UUUUUUUUUUUUGUGUGCAGGUGGCCUAAAGUGCCCCAAAAGUGUCUAGUAAUAGUUAAAGAAGUGUGCGCUAGAU-------GAAA -----...((((.(((.(((..((((.((((....).)))))........(((....))).........))..))).))).-------)))) ( -16.80) >consensus ACAGAUCCUUUGCGCUGGUGCGCAGGCGGCUUAAAGUGCCCCAAAAGUGUUUAAUAAUAGUUAAAAAGGUGUGCGCAAGAUACCAAAGGAAA .....(((((((..((.(((((((((.(((.......))))).......((((((....))))))....))))))).))....))))))).. (-18.24 = -19.03 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:10 2006