Locus 2809

Sequence ID X_DroMel_CAF1
Location 7,502,732 – 7,502,830
Length 98
Max. P 0.522862
window4611

overview

Window 1

Location 7,502,732 – 7,502,830
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 92.83
Mean single sequence MFE -22.87
Consensus MFE -19.59
Energy contribution -19.37
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.84
Structure conservation index 0.86
SVM decision value -0.02
SVM RNA-class probability 0.522862
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7502732 98 + 22224390
UAUAGAGACAGCAGACUGAGGCAUAACCUUAAUUCCUUUUGGCAUUUUAUGCUUCCUUCUGUCGCACUGAGAAAAAAUUGCUUUCAUUUGACUUUUGA
....((((..(((((..(((((((((....(((.((....)).))))))))))))..))))).(((.(........).)))))))............. ( -19.90)
>DroSim_CAF1 3486 97 + 1
UAUAGAGACAGCAGACUGAGGCAUAACCUUAAUUCCUUUUGGCAUUUUAUGCUUCCUUCUGUCGCACUGA-AAAAAAUAGAGCUCAUUUGACUUUUAA
..(((.(.(.(((((..(((((((((....(((.((....)).))))))))))))..))))).)).))).-......(((((.((....)).))))). ( -20.30)
>DroEre_CAF1 4283 97 + 1
UAUAGCGACAGCAGACUGAGGCAUAACCUUAAUUCCUUUUGGCAUUUUAUGCUUCCUUCUGUCGCACUAA-GAAAAAUGGCGUUCAUUUGACUUUGGA
....(((((((.((...(((((((((....(((.((....)).)))))))))))))).))))))).((((-(..(((((.....)))))...))))). ( -28.40)
>consensus
UAUAGAGACAGCAGACUGAGGCAUAACCUUAAUUCCUUUUGGCAUUUUAUGCUUCCUUCUGUCGCACUGA_AAAAAAUAGCGUUCAUUUGACUUUUGA
..(((.(.(.(((((..(((((((((....(((.((....)).))))))))))))..))))).)).)))............................. (-19.59 = -19.37 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:04 2006