Locus 2804

Sequence ID X_DroMel_CAF1
Location 7,487,519 – 7,487,635
Length 116
Max. P 0.993775
window4593

overview

Window 3

Location 7,487,519 – 7,487,635
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.79
Mean single sequence MFE -41.00
Consensus MFE -35.50
Energy contribution -35.34
Covariance contribution -0.16
Combinations/Pair 1.15
Mean z-score -2.09
Structure conservation index 0.87
SVM decision value 2.42
SVM RNA-class probability 0.993775
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7487519 116 + 22224390
AGCAUUUUCCCCAUGGCA-GCCUGUCAUGUCAUGUAGGCGUUUAAGUGGCAGUCAUGGGUUAAGGGAGGGACUU-UCAAGAGUCCUUCGACUUU-UGCAGCUAACUAGGGAGUAAGGUA-
.((((((..((((((((.-(((((.(((...))))))))(((.....))).))))))))..))).(((((((((-....)))))))))......-)))..((.(((....))).))...- ( -40.30)
>DroSec_CAF1 20546 116 + 1
AGCAUUUUCCCCAUGACA-GCCUGUCAUGUCAUGUAGGCGUUUAAGUGGCAGUCAUGGGUUAAGGGAGGGACUU-UCAAGAGUCCUUCGACUUU-UGCAGCUAACUAGGGAGUAGGGUA-
.((((((..((((((((.-(((((.(((...))))))))(((.....))).))))))))..))).(((((((((-....)))))))))......-))).(((.(((....)))..))).- ( -41.00)
>DroSim_CAF1 22544 116 + 1
AGCAUUUUCCCCAUGACA-GCCUGUCAUGUCAUGUAGGCGUUUAAGUGGCAGUCAUGGGUUAAGGGAGGGACUU-UCAAGAGUCCUUCGACUUU-UGCAGCUAACUAGGGAGUAGGGUA-
.((((((..((((((((.-(((((.(((...))))))))(((.....))).))))))))..))).(((((((((-....)))))))))......-))).(((.(((....)))..))).- ( -41.00)
>DroEre_CAF1 21563 118 + 1
AGCAUUUUCCCCACGACA-GCCUGUCAUGUCAUGUAGGCGUUUAAGUGGCAGUCAUGGGUUAAGGGAGGGACUUCUCAAGAGUCCUUCAACUUCUUGCAGCUAACUAGGCAGCAAGGUA-
....(((..((((.(((.-(((((.(((...))))))))(((.....))).))).))))..))).(((((((((.....)))))))))....((((((.(((.....))).))))))..- ( -41.50)
>DroYak_CAF1 24117 120 + 1
AGCUUUUUCUUCCUGUCAUGCCUGUCAUGUCAUGUAGGCGUUUAAGUGGCAGUCAUGGGUUAAGGGAGGGACUUGUCACAAGUCCUGCGACUUUGCGCGGCUAACUAGGCAGUAGGGCAG
.((.....((((((.(((((.(((((((...(((....)))....))))))).)))))....))))))(((((((...))))))).))(.((((((...(((.....))).))))))).. ( -41.20)
>consensus
AGCAUUUUCCCCAUGACA_GCCUGUCAUGUCAUGUAGGCGUUUAAGUGGCAGUCAUGGGUUAAGGGAGGGACUU_UCAAGAGUCCUUCGACUUU_UGCAGCUAACUAGGGAGUAGGGUA_
.((.(((..((((((((..(((((.(((...))))))))(((.....))).))))))))..))).(((((((((.....)))))))))........))(.((.(((....))).)).).. (-35.50 = -35.34 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:48 2006