Locus 2802

Sequence ID X_DroMel_CAF1
Location 7,487,193 – 7,487,303
Length 110
Max. P 0.562662
window4591

overview

Window 1

Location 7,487,193 – 7,487,303
Length 110
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 96.94
Mean single sequence MFE -20.83
Consensus MFE -19.83
Energy contribution -20.17
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.95
SVM decision value 0.06
SVM RNA-class probability 0.562662
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7487193 110 - 22224390
AAAAACACGGAAAUGGAGGUUAAGCUCUUGCUUUGACAGCCACAAAUGCUAAAAUAAGGAUAUAUAUACUUGAAAACUGGAGCACAUACAUAACAUGUGUUCAUACAUAU
.......(((...(((..(((((((....)).)))))..)))............((((..........))))....)))((((((((.......))))))))........ ( -21.80)
>DroSec_CAF1 20223 107 - 1
AAAAACACGGAAAUGGAGGUUAAGCUCUUGCUUUGACAGCCACAAAUGCUAAAAUAAGGAUAUAUAUACUUGAAAACUGGAGCACAUACAU---AUGCGUUCAUAUAUAU
.......(((...(((..(((((((....)).)))))..)))............((((..........))))....)))((((.(((....---))).))))........ ( -18.40)
>DroSim_CAF1 22221 107 - 1
AAAAACACGGAAAUGGAGGUUAAGCUCUUGCUUUGACAGCCACAAAUGCUAAAAUAAGGAUAUAUAUACUUGAAAACUGGAGCACAUACAU---AUGUGUUCAUACAUAU
.......(((...(((..(((((((....)).)))))..)))............((((..........))))....)))((((((((....---))))))))........ ( -22.30)
>consensus
AAAAACACGGAAAUGGAGGUUAAGCUCUUGCUUUGACAGCCACAAAUGCUAAAAUAAGGAUAUAUAUACUUGAAAACUGGAGCACAUACAU___AUGUGUUCAUACAUAU
.......(((...(((..(((((((....)).)))))..)))............((((..........))))....)))((((((((.......))))))))........ (-19.83 = -20.17 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:46 2006