| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 945,975 – 946,065 |
| Length | 90 |
| Max. P | 0.728631 |
| Location | 945,975 – 946,065 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 88.65 |
| Mean single sequence MFE | -29.57 |
| Consensus MFE | -23.23 |
| Energy contribution | -23.90 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 945975 90 + 22224390 UUAACACAAUUGCUAUUAGCGCUGAUAGCAAGUGCAC----AUACGGCUGCAGUUU--UGCUGUAGCUCAUAAGUUUUUGUGUUUCUGCCGCCGGC ..(((((((..(((....(((((.......)))))..----....((((((((...--..))))))))....)))..)))))))...(((...))) ( -29.50) >DroSim_CAF1 26065 90 + 1 UUAACACAAUUGCUAUUAGCGCUGAUAGCAAGUGCAC----AUACGGCUGCAGUUU--UGCUGUAGCCCAUAAGUUUUUGUGUUUCUGCCGCCGGC ..(((((((..(((....(((((.......)))))..----....((((((((...--..))))))))....)))..)))))))...(((...))) ( -31.90) >DroYak_CAF1 31093 96 + 1 UUAACAGAAUUGCCAUUAGCGCUGAUAGCAAGUGCACGUACAUACGACUGCCAUGUGGCGCUGUAGCUCAUGAGUUUUUGUGUUUCUGCAGCCGGC ...........(((....(((((.......))))).(((....)))...(((....)))(((((((..((..(....)..))...))))))).))) ( -27.30) >consensus UUAACACAAUUGCUAUUAGCGCUGAUAGCAAGUGCAC____AUACGGCUGCAGUUU__UGCUGUAGCUCAUAAGUUUUUGUGUUUCUGCCGCCGGC ..(((((((..(((((..(((((.......)))))..........(((((((((.....))))))))).))).))..)))))))...((.....)) (-23.23 = -23.90 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:43 2006