| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 124,209 – 124,362 |
| Length | 153 |
| Max. P | 0.741648 |
| Location | 124,209 – 124,322 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 74.09 |
| Mean single sequence MFE | -25.66 |
| Consensus MFE | -10.33 |
| Energy contribution | -12.34 |
| Covariance contribution | 2.01 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 124209 113 + 22224390 AACAAUGGACAUUAGUUUUCAAAUCCCAAUGGACGGAGAAAAAAAAAACAGCAGGCGAAAGCUACAGACAACUCAUAACUGCAACUCCAUCCGAUUGCUGCAUCUGCAAUAGU ....(((((......(((((...(((....)))..)))))..........((((((....))....((....))....))))...)))))...(((((.......)))))... ( -23.00) >DroSec_CAF1 12304 111 + 1 AACAAUGGACAUUAGUUUUCAAAUCCCGAUGGACGAAGGGA--AAAUACAGCAGGCGAAAGCUGCAGACAACUCAUAACUGCAACUCCAUCCGAUUGCUGCAUCUGCAAUAGU ....(((((...(((((......((((..........))))--.......((((.(....)))))...........)))))....)))))...(((((.......)))))... ( -24.30) >DroSim_CAF1 18072 110 + 1 AACAAUGGAAUUUAUUUUUCAAAUCCCGAUGGACGGGAGG---AAAUACAGCAGGCCAAAGCGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ................((((...(((((.....))))).)---)))........(((.....)))................................................ ( -14.50) >DroEre_CAF1 18716 112 + 1 AACAAUGGGCAUUAGUUUUGAAAUCCCAAUGGAUGGGGUGAA-AAAAACAGCAGGCGAAAGCUGCAGACAACUCAUAACUGCAACUCCAUCCGAUCGCUGCAUCUGCAAUAGU .....((((.(((........))))))).((((((((((...-..........(((....)))((((...........)))).)))))))))).....(((....)))..... ( -32.20) >DroYak_CAF1 15234 112 + 1 AACAAUGGGCAUUAGUUUUGAAAUCCCAAUGGAUGGGGUGAA-AAAGAUAGCAGGCGAAAGCUGCAGACAACUCAUAACUGCAACUCCAUCCGAUUGCUGCAUCUGCAAUAGU .....((((.(((........))))))).((((((((((...-..........(((....)))((((...........)))).))))))))))(((((.......)))))... ( -34.30) >consensus AACAAUGGACAUUAGUUUUCAAAUCCCAAUGGACGGGGGGAA_AAAAACAGCAGGCGAAAGCUGCAGACAACUCAUAACUGCAACUCCAUCCGAUUGCUGCAUCUGCAAUAGU ....(((((..............(((((.....)))))............((((.(....)))))....................)))))...(((((.......)))))... (-10.33 = -12.34 + 2.01)
| Location | 124,244 – 124,362 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 93.62 |
| Mean single sequence MFE | -28.25 |
| Consensus MFE | -26.11 |
| Energy contribution | -26.18 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584021 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 124244 118 + 22224390 GAGAAAAAAAAAACAGCAGGCGAAAGCUACAGACAACUCAUAACUGCAACUCCAUCCGAUUGCUGCAUCUGCAAUAGUUUUUUAGGCAGCCAAAGAUUUGUUUGUAUAGUAAAUGCAC ...............((((((....)))((((((((.((....((((...........(((((.......)))))..........)))).....)).))))))))........))).. ( -27.50) >DroSec_CAF1 12339 116 + 1 AAGGGA--AAAUACAGCAGGCGAAAGCUGCAGACAACUCAUAACUGCAACUCCAUCCGAUUGCUGCAUCUGCAAUAGUUUUGUAGUCAGCCAAAGAUUUGUUUGUAUUGUAAAUGCAC ......--.......((((((....)))((((((((.((......((((.((.....)))))).((..((((((.....))))))...))....)).))))))))........))).. ( -28.40) >DroEre_CAF1 18751 117 + 1 GGGUGAA-AAAAACAGCAGGCGAAAGCUGCAGACAACUCAUAACUGCAACUCCAUCCGAUCGCUGCAUCUGCAAUAGUUUUGUAGUCAGCCAAAGAUUUGUUUGUAUUGUAAAUGCAC (((((..-..........(((....)))((((...........)))).....)))))....((((...((((((.....)))))).))))............(((((.....))))). ( -28.60) >DroYak_CAF1 15269 117 + 1 GGGUGAA-AAAGAUAGCAGGCGAAAGCUGCAGACAACUCAUAACUGCAACUCCAUCCGAUUGCUGCAUCUGCAAUAGUUUUGUAGUCAGCCAAAGAUUUGUUUGUAUAGUAAAUGCAC (((((..-..........(((....)))((((...........)))).....)))))....((((...((((((.....)))))).))))............(((((.....))))). ( -28.50) >consensus GAGUGAA_AAAAACAGCAGGCGAAAGCUGCAGACAACUCAUAACUGCAACUCCAUCCGAUUGCUGCAUCUGCAAUAGUUUUGUAGUCAGCCAAAGAUUUGUUUGUAUAGUAAAUGCAC ...............((((((....)))((((((((.((...........((.....))..((((...((((((.....)))))).))))....)).))))))))........))).. (-26.11 = -26.18 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:46 2006