Locus 2796

Sequence ID X_DroMel_CAF1
Location 7,482,568 – 7,482,680
Length 112
Max. P 0.993553
window4580

overview

Window 0

Location 7,482,568 – 7,482,680
Length 112
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 83.19
Mean single sequence MFE -24.40
Consensus MFE -15.81
Energy contribution -16.38
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -3.56
Structure conservation index 0.65
SVM decision value 2.41
SVM RNA-class probability 0.993553
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7482568 112 - 22224390
ACACAAAUAUGCAUAUGCGAUAUAUUUGCAUAUAUUUUUAUACAGAUAAAAAA--AUAUGUAGGCCAUCGACACGGUAUCAUAGAUAUCAAUGUGUAACAUCAAAUUAUGCAAA
.........((((((..((((...(((((((((.(((((((....))))))).--)))))))))..))))((((((((((...))))))...))))..........)))))).. ( -25.20)
>DroSec_CAF1 15674 112 - 1
ACACAAAUAUGCAUAUGCGAUAUAUUUGCAUAUGUUUUUAUACAGAUAAAAAA--AUAUGUAGGUCAUCGACACGGUAUUAUAGCUAUCAACAUGUAACAUCUAAUUAUGCAAA
.........((((((((((((..((((((((((.(((((((....))))))).--)))))))))).)))).)).(((.(((((..........))))).)))....)))))).. ( -23.30)
>DroSim_CAF1 17349 112 - 1
ACACAAAUAUGCAUAUGCGAUAUAUUUGCAUAUAUUUUUAUACAGAUAAAAAA--AUAUGUAGGUCAUCGACAAGGUAUUAUAGCUAUCAACAUGUAACAUCUAAUUAUGCAAA
.........((((((((((((..((((((((((.(((((((....))))))).--)))))))))).)))).))((((.(((((..........))))).))))...)))))).. ( -24.70)
>DroEre_CAF1 16696 93 - 1
UCGCAAAAAUGCAUAUGCGAUAUAUUUGCAUAUAUUUUUAUGCAGAUAAAGAAAUAUAUGUAGGUCAUCGAUUG--------------------GUAACAUCCAAUUA-GCAAA
..(((....)))...((((((..((((((((((((((((..........)))))))))))))))).)))(((((--------------------(......)))))).-))).. ( -24.40)
>consensus
ACACAAAUAUGCAUAUGCGAUAUAUUUGCAUAUAUUUUUAUACAGAUAAAAAA__AUAUGUAGGUCAUCGACACGGUAUUAUAGCUAUCAACAUGUAACAUCUAAUUAUGCAAA
.........((((((..((((..((((((((((.(((((((....)))))))...)))))))))).))))....((((.......)))).................)))))).. (-15.81 = -16.38 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:36 2006