Locus 2795

Sequence ID X_DroMel_CAF1
Location 7,482,454 – 7,482,561
Length 107
Max. P 0.515232
window4579

overview

Window 9

Location 7,482,454 – 7,482,561
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 71.24
Mean single sequence MFE -20.94
Consensus MFE -1.70
Energy contribution -2.02
Covariance contribution 0.32
Combinations/Pair 1.18
Mean z-score -1.52
Structure conservation index 0.08
SVM decision value -0.04
SVM RNA-class probability 0.515232
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7482454 107 - 22224390
-UACAUAGUCAAUGUUAAAC-----CCACGUUACAAAAUGGUAAUUCAAAUU---ACUGUUUGUAUUACUGAUG-U-ACCAAAAUGGUCAAAAUUUUUCUACGGUGCAUC--UAUAUCUG
-......((.(((((.....-----..))))))).....((((((.(((((.---...))))).))))))((((-(-((((((((.......))))).....))))))))--........ ( -19.70)
>DroSec_CAF1 15559 108 - 1
-UACAUAGUCAAUGUAAAAC-----UUACGUUACAAAAUAGUUAUACAAACUGAGACUAUUA--UUUACUGAUG-U-ACUGAAAUGGUCAACAUUUUUCUACGGUGCAUC--UAUAUCUG
-...((((((((((((....-----.))))))......(((((.....))))).))))))..--......((((-(-(((((((((.....))))).....)))))))))--........ ( -23.70)
>DroSim_CAF1 17234 108 - 1
-UACAUAGUCAAUGUAAAAC-----UUACGUUACAAAAUAGUUAUUCAAACUGAGACUAUUA--UUUACUGAUG-U-ACUGAAAUGGUCAACAUUUUUCUACGGUGCAUC--UAUAUUUG
-...((((((((((((....-----.))))))......(((((.....))))).))))))..--......((((-(-(((((((((.....))))).....)))))))))--........ ( -23.70)
>DroEre_CAF1 16573 103 - 1
AUACAUAUCUAAUGUAAAAUGUAAUGUA-UCUACUAAAGAU----------UAUGGCGAUUA--UUUAGUGAUU-A-UCCGAAAUGGUGAGCAUUUUUCUACGGUGCAUC--UACAGCUG
.(((((.....)))))...(((((((((-((((((((((((----------(.....)))).--)))))))...-.-...((((((.....)))))).....))))))).--)))).... ( -18.00)
>DroYak_CAF1 18788 112 - 1
AUACAUAUGCAAUUUAAGGC-----CCA-GCUACUAAAGAUUGCUUUCAAUUAAGAUUAUUA--UUUACACAUUUAUUUGGAAAUGGUAAAUAUUUUUCCACGGUGCAUCUCUAUAGCUG
....................-----.((-((((.((.((((.((...(......((..(.((--(((((.(((((......)))))))))))).)..))....).)))))).)))))))) ( -19.60)
>consensus
_UACAUAGUCAAUGUAAAAC_____CUACGUUACAAAAUAGUUAUUCAAACUAAGACUAUUA__UUUACUGAUG_U_ACCGAAAUGGUCAACAUUUUUCUACGGUGCAUC__UAUAUCUG
.(((((.....)))))................................................................((((((.....))))))....................... ( -1.70 =  -2.02 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:35 2006