| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 942,975 – 943,067 |
| Length | 92 |
| Max. P | 0.902157 |
| Location | 942,975 – 943,067 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 73.05 |
| Mean single sequence MFE | -28.08 |
| Consensus MFE | -12.19 |
| Energy contribution | -14.95 |
| Covariance contribution | 2.76 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.43 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.902157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 942975 92 + 22224390 -UAAAGCCUAAAGCCAAAAGCCA-------AAAGUCGAACCACGGACAUCGAAAACAUGCAACGAGGUUGGACAUUUUGCUU-------UUUGAGAACACUAGGCGG -....(((((...(((((((.((-------((((((.((((.((..(((.......)))...)).)))).))).))))).))-------)))).).....))))).. ( -26.20) >DroSec_CAF1 25895 98 + 1 -UAAAGGCUAAAGCCAAAAGCCA-AAGCCAAAAGUCGAACCACGGACAUCGAAAACAUGCAACGAGGUGGGGCAUUGGGCUU-------UUUGGGAGCACUAGGCAG -....(((....)))....((((-(((((....(((..(((.((..(((.......)))...)).)))..)))....)))))-------).(((.....)))))).. ( -27.30) >DroSim_CAF1 21972 98 + 1 -UAAAGCCUAAAGCCAAAAGCCA-AAGCCGAAAGUCGAACCACGGACAUCGAAAACAUGCAACGAGGUGGGGCAUUGGGCUU-------UUUGGGAGCACUAGGCAG -....(((((..((......(((-(((((.((.(((..(((.((..(((.......)))...)).)))..))).)).)))).-------.))))..))..))))).. ( -28.30) >DroEre_CAF1 34286 94 + 1 UGGCAGCUUAAGGCCAAAAGCCAAAAGCU-------GAACCACGGACAACGAAAACAUACGACUUGUCGAGGCAUUGGGCUU------UUUGGGGAGCAUUGGGCAU (((((((((..(((.....)))..)))))-------)..)))..(((((((........))..)))))...((.....((((------(....))))).....)).. ( -24.30) >DroYak_CAF1 27988 97 + 1 UGGCAGCCUAAAGCCAAAAGCUGAAAGCUGAAUGCUGAACCACGGACAACGA----------CGAGGCGAGGCAUUGGGCAUUGGGUUGUUUGGGAACAUUAGGCAU .....((((((.((((((((((.((.(((.((((((...((.((........----------)).))...)))))).))).)).)))).)))))...).)))))).. ( -34.30) >consensus _UAAAGCCUAAAGCCAAAAGCCA_AAGCC_AAAGUCGAACCACGGACAUCGAAAACAUGCAACGAGGUGGGGCAUUGGGCUU_______UUUGGGAGCACUAGGCAG .....(((((...(((((......(((((.((.(((..(((.((..................)).)))..))).)).))))).......)))))......))))).. (-12.19 = -14.95 + 2.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:42 2006