Locus 2785

Sequence ID X_DroMel_CAF1
Location 7,475,002 – 7,475,110
Length 108
Max. P 0.963431
window4553

overview

Window 3

Location 7,475,002 – 7,475,110
Length 108
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.71
Mean single sequence MFE -20.30
Consensus MFE -20.30
Energy contribution -20.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 1.00
SVM decision value 1.55
SVM RNA-class probability 0.963431
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7475002 108 - 22224390
-CCCC----CCUCAACGCUGGUUGGGCGCCUUUGAAACUUGGGAACUUGUCAACCCAAACC-CCCGAAAAGCCAAUCCCCACCCCAAUUCAAUGCCCCAAAACGCACGAAAAAA------
-....----.......((...(((((.((..(((((..(((((...(((......)))...-...((........)).....)))))))))).)))))))...)).........------ ( -20.30)
>DroSec_CAF1 8250 108 - 1
-CCCC----CCUCAACGCUGGUUGGGCGCCUUUGAAACUUGGGAACUUGUCAACCCAAACC-CCCGAAAAGCCAAUCCCCACCCCAAUUCAAUGCCCCAAAACGCACGAAAAAA------
-....----.......((...(((((.((..(((((..(((((...(((......)))...-...((........)).....)))))))))).)))))))...)).........------ ( -20.30)
>DroEre_CAF1 8879 109 - 1
AACCC----CCUCAACGCUGGUUGGGCGCCUUUGAAACUUGGGAACUUGUCAACCCAAACC-CCCGAAAAGCCAAUCCCCACCCCAAUUCAAUGCCCCAAAACGCACGAAAAAA------
.....----.......((...(((((.((..(((((..(((((...(((......)))...-...((........)).....)))))))))).)))))))...)).........------ ( -20.30)
>DroYak_CAF1 12054 120 - 1
AACCCCCCCCCUUAACGCUGGUUGGGCGCCUUUGAAACUUGGGAACUUGUCAACCCAAACCCCCCGAAAAGCCAAUCCCCACCCCAAUUCAAUGCCCCAAAACGCACAAGAAAAAAAAAA
................((...(((((.((..(((((..(((((...(((......))).......((........)).....)))))))))).)))))))...))............... ( -20.30)
>consensus
_ACCC____CCUCAACGCUGGUUGGGCGCCUUUGAAACUUGGGAACUUGUCAACCCAAACC_CCCGAAAAGCCAAUCCCCACCCCAAUUCAAUGCCCCAAAACGCACGAAAAAA______
................((...(((((.((..(((((..(((((...(((......))).......((........)).....)))))))))).)))))))...))............... (-20.30 = -20.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:13 2006