| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,473,656 – 7,473,761 |
| Length | 105 |
| Max. P | 0.724027 |
| Location | 7,473,656 – 7,473,761 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.19 |
| Mean single sequence MFE | -36.42 |
| Consensus MFE | -30.67 |
| Energy contribution | -31.92 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7473656 105 + 22224390 ------GUGCUUGUGCCUCUGCCUGUGCGGUGAAAACCAAUCACAAGUGGGGCCCGAAAGGCGUUGCCGAUAUGUAUUGAAAGCAAUCCAUAU------AUAUACGGUGGGUAUCUC--- ------((((((..(((.(..(.((((.(((....)))...)))).)..))))((....))....((((((((((((.((......)).))))------)))).))))))))))...--- ( -34.60) >DroSec_CAF1 6895 105 + 1 ------GUGCUUGUGCCGCUGCCUGUGCGGUGAAAACCAAUCACAAGUGGGGCCCGAAAGGCGUUGCCGAUAUGUAUUGAAAGCAAUCCAUAU------AUAUACGGUGGGUAUCUC--- ------((((((..(((.(..(.((((.(((....)))...)))).)..))))((....))....((((((((((((.((......)).))))------)))).))))))))))...--- ( -34.60) >DroEre_CAF1 7445 114 + 1 GUGCUUGUGCCUCUGCCUCUGCCUGUGCGGUGAAAACCAAUCACAAGUGGGGCCCGAAAGGCGUUGCCGAUAUGUAUUGAAAGCAAUCCAUAU------AUAUACGGUGGGUAUCUCUCU ......((((((..(((.(..(.((((.(((....)))...)))).)..))))((....))....((((((((((((.((......)).))))------)))).))))))))))...... ( -37.00) >DroYak_CAF1 10347 120 + 1 GUAUGUGUGCCUGUGCCUCUGCCUGUGCGGUGAAAACCAAUCACAAGUGGGGCCCGAAAGGCGUUGCCGAUAUGUAUUGAAAGCAAUCCAUAUAUACAUAUAUACGGUGGGUAUCUCACU ((((((((((((..(((.(..(.((((.(((....)))...)))).)..)))).....))))((.....(((((.((((....)))).)))))..))))))))))((((((...)))))) ( -39.50) >consensus ______GUGCCUGUGCCUCUGCCUGUGCGGUGAAAACCAAUCACAAGUGGGGCCCGAAAGGCGUUGCCGAUAUGUAUUGAAAGCAAUCCAUAU______AUAUACGGUGGGUAUCUC___ ......((((((..(((.(..(.((((.(((....)))...)))).)..))))(((...(((...))).(((((.((((....)))).)))))...........))).))))))...... (-30.67 = -31.92 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:12 2006