Locus 2783

Sequence ID X_DroMel_CAF1
Location 7,471,354 – 7,471,493
Length 139
Max. P 0.965785
window4550 window4551

overview

Window 0

Location 7,471,354 – 7,471,453
Length 99
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 90.94
Mean single sequence MFE -12.43
Consensus MFE -12.20
Energy contribution -12.20
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.98
SVM decision value 1.59
SVM RNA-class probability 0.965785
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7471354 99 + 22224390
UUUAGCAACAACAACGAUAAAUCGACACCCAACUAACAACAACAAGUGGUGAACACAUAUGUACUUAUAUAUAUGUAUGGCCAACUAUAAAGGACAAAC
....((........(((....))).((((..(((..........)))))))...(((((((((....)))))))))...)).................. ( -12.90)
>DroSec_CAF1 4613 89 + 1
UUUAACAACAACAACGAUAAAUCGAAACCCAACUAACAACAACAAGUGGUGAACACAUAUGUACCUAUAUAUAUGUAUGGCCAA----------CAAAC
..............(((....)))......................((((.(..(((((((((....))))))))).).)))).----------..... ( -12.20)
>DroSim_CAF1 6332 89 + 1
UUUAACAACAACAACGAUAAAUCGACACCCAACUAACAACAACAAGUGGUGAACACAUAUGUACUUAUAUAUAUGUAUGGCCAA----------CAAAC
..............(((....)))......................((((.(..(((((((((....))))))))).).)))).----------..... ( -12.20)
>consensus
UUUAACAACAACAACGAUAAAUCGACACCCAACUAACAACAACAAGUGGUGAACACAUAUGUACUUAUAUAUAUGUAUGGCCAA__________CAAAC
..............(((....)))......................((((.(..(((((((((....))))))))).).))))................ (-12.20 = -12.20 +   0.00)

alignment

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secondary structure

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dotplot

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Window 1

Location 7,471,393 – 7,471,493
Length 100
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 82.59
Mean single sequence MFE -20.85
Consensus MFE -15.14
Energy contribution -15.20
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -2.33
Structure conservation index 0.73
SVM decision value 1.49
SVM RNA-class probability 0.958424
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7471393 100 + 22224390
CAACAAGUGGUGAACACAUAUGUACUUAUAUAUAUGUAU------------GGCCAACUAUAAAGGACAAACGAAGCGAGUCCCUUCUCAUUUUUUACUAGUCCCCUCAAAA
.....((((((.(..(((((((((....))))))))).)------------.))).))).....((((....((((.(((......))).))))......))))........ ( -18.60)
>DroSec_CAF1 4652 90 + 1
CAACAAGUGGUGAACACAUAUGUACCUAUAUAUAUGUAU------------GGCCAA----------CAAACGGAGCGAGUCCUUUCUCAUUUUUUACUUGUCCCCUCAAAU
..(((((((((.(..(((((((((....))))))))).)------------.)))..----------..........(((......))).......)))))).......... ( -18.00)
>DroSim_CAF1 6371 90 + 1
CAACAAGUGGUGAACACAUAUGUACUUAUAUAUAUGUAU------------GGCCAA----------CAAACGAAACGAGUCCUUUCUCAUUUUUUACUUGUCCCCUCAAAU
..(((((((((.(..(((((((((....))))))))).)------------.)))..----------..........(((......))).......)))))).......... ( -18.00)
>DroYak_CAF1 7105 112 + 1
CAACAAGUGGUGAACACAUAUGUACUCAUAUGUAUGUAUGUUUGUAUAUACGUUCAACUAUAAAGGACAAACGAAGCGAGUCCUUUCUCAUUUUUUACUUGUCCCCUCAACU
..((((((((((((((((((((....)))))))..((((((....))))))))))).....(((((((...........)))))))........)))))))).......... ( -28.80)
>consensus
CAACAAGUGGUGAACACAUAUGUACUUAUAUAUAUGUAU____________GGCCAA__________CAAACGAAGCGAGUCCUUUCUCAUUUUUUACUUGUCCCCUCAAAU
..((((((((.(((.(((((((((....)))))))))........................................(((......))).))).)))))))).......... (-15.14 = -15.20 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:11 2006