Locus 2781

Sequence ID X_DroMel_CAF1
Location 7,470,309 – 7,470,417
Length 108
Max. P 0.653961
window4545

overview

Window 5

Location 7,470,309 – 7,470,417
Length 108
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 92.48
Mean single sequence MFE -26.65
Consensus MFE -24.06
Energy contribution -23.88
Covariance contribution -0.19
Combinations/Pair 1.03
Mean z-score -1.45
Structure conservation index 0.90
SVM decision value 0.25
SVM RNA-class probability 0.653961
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7470309 108 + 22224390
UUCGGUCUGGAGGUGGAUAUAAAAA---AAAAAGAUGUAGGGAGCGCAUAAAAAUUGGCAGCAGUUUGGGGCAGACAGCAUCGCAGACAAGUAAACUUUUUAUGCCAUC------AC
...........(((((.((((((((---.....(((((.(...((.(....((((((....)))))).).))...).)))))((......))....)))))))))))))------.. ( -23.80)
>DroSec_CAF1 3575 109 + 1
UUCGGUCUGGAGGUGGAUAUAAAAA--AAAAAAGAUGUAGGGAGCGCAUAAAAAUUGGCAGCAGUUUGGGGCAGACAGCAUCGCAGACAAGUAAACUUUUUAUGCCACC------AC
...........(((((.((((((((--......(((((.(...((.(....((((((....)))))).).))...).)))))((......))....)))))))))))))------.. ( -26.40)
>DroSim_CAF1 5280 109 + 1
UUCGGUCUGGAGGUGGAUAUAAAAA--AAAAAAGAUGUAGGGAGCGCAUAAAAAUUGGCAGCAGUUUGGGGCAGACAGCAUCGCAGACAAGUAAACUUUUUAUGCCACC------AC
...........(((((.((((((((--......(((((.(...((.(....((((((....)))))).).))...).)))))((......))....)))))))))))))------.. ( -26.40)
>DroYak_CAF1 5978 110 + 1
-------UGGAGGUGGAUAUAAAAAAAAAAAAAGAUGUAGGGAGCGCAUAAAAAUUGGCAGCAGUUUGGGGCAGACAGCAUCGCAGACAAGUAAACUUUUUAUGCCACCGCCACCAC
-------(((.(((((.((((((((........(((((.(...((.(....((((((....)))))).).))...).)))))((......))....))))))))))))).))).... ( -30.00)
>consensus
UUCGGUCUGGAGGUGGAUAUAAAAA__AAAAAAGAUGUAGGGAGCGCAUAAAAAUUGGCAGCAGUUUGGGGCAGACAGCAUCGCAGACAAGUAAACUUUUUAUGCCACC______AC
...........(((((.((((((((........(((((.(...((.(....((((((....)))))).).))...).)))))((......))....)))))))))))))........ (-24.06 = -23.88 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:06 2006