Locus 2777

Sequence ID	X_DroMel_CAF1
Location	7,468,319 – 7,468,433
Length	114
Max. P	0.532660

overview

Window 3

Location	7,468,319 – 7,468,433
Length	114
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	90.46
Mean single sequence MFE	-27.63
Consensus MFE	-22.46
Energy contribution	-22.28
Covariance contribution	-0.19
Combinations/Pair	1.04
Mean z-score	-1.42
Structure conservation index	0.81
SVM decision value	-0.00
SVM RNA-class probability	0.532660
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7468319 114 + 22224390
AAUUUAUU-UUGGAGCGACUUCCGUUUGUUCUACAUUGACAUGCCAAAGUCGGACCCGCUCAGUUACUACUGUAGUCAGAGUAGUCAGUAGUCAGUUCAGUCCAUCCAUCCAUCC
........-.((((..(((((..((.((((.......)))).))..)))))((((..(((.....(((((((.............))))))).)))...)))).))))....... ( -25.22)
>DroSec_CAF1 1626 112 + 1
AAUUUAUU-UUGGAGCGACUUCCGUUUGUUCUACAUUGACAUGCCAAAGUCGGACCCGCUCAGUUACUACUGUAGUCA--GUAGUCGGUAGUCAGUCCAGUCCAUCCAUCCAUCC
........-.((((..(((((..((.((((.......)))).))..)))))((((..(((.(.(.(((((((....))--))))).).))))..))))......))))....... ( -29.10)
>DroSim_CAF1 3328 112 + 1
AAUUUAUU-UUGGAGCGACUUCCGUUUGUUCUACAUUGACAUGCCAAAGUCGGACCCGCUCAGUUACUACUGUAGUCA--GUAGUCGGUAGUCAGUCCAGUCCAUCCAUCCAUCC
........-.((((..(((((..((.((((.......)))).))..)))))((((..(((.(.(.(((((((....))--))))).).))))..))))......))))....... ( -29.10)
>DroEre_CAF1 1880 98 + 1
AAUUUAUUUUUGGAGCGACUUCCGUUUGUUCUACAUUGACAUGCCAAAGUCGGACCCGCUCAGUUACUACUG--------GUAGUCCGUAGUCGGUCCA---------UCCAUCC
..........((((.(((((...((.((((.......)))).))......(((((..((.((((....))))--------)).))))).))))).))))---------....... ( -27.10)
>consensus
AAUUUAUU_UUGGAGCGACUUCCGUUUGUUCUACAUUGACAUGCCAAAGUCGGACCCGCUCAGUUACUACUGUAGUCA__GUAGUCGGUAGUCAGUCCAGUCCAUCCAUCCAUCC
..........((((..(((((..((.((((.......)))).))..)))))((((..(((.....(((((..........)))))....)))..))))..........))))... (-22.46 = -22.28 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:55 2006