Locus 277

Sequence ID X_DroMel_CAF1
Location 937,209 – 937,301
Length 92
Max. P 0.589597
window422

overview

Window 2

Location 937,209 – 937,301
Length 92
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 88.72
Mean single sequence MFE -23.25
Consensus MFE -16.46
Energy contribution -16.77
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -1.67
Structure conservation index 0.71
SVM decision value 0.11
SVM RNA-class probability 0.589597
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 937209 92 + 22224390
AAACUAUUUAUGUAUCCCCGCUAAUGGCCAGAGUUGGUCGGGGAAGCAGAAAGAAAACCAGGAAAAUUAAUCGAAAUAAAGUGGUUUGG---------GCA
(((((((((.(((.(((((((((((.......))))).)))))).))).............((.......))......)))))))))..---------... ( -22.70)
>DroSec_CAF1 20316 97 + 1
AAACUAUUUAUGUAUCCCCGCUAAUGGCCAGAGUUGGUCGGGGAAGUAGAAAGAAAACCAGGAGAAUUAAGCGAAAUGAAGUGGUUUGGG----GUAGGCA
...((((((.....(((((((((((.......))))).))))))..........((((((.....(((......)))....)))))).))----))))... ( -22.60)
>DroSim_CAF1 16363 97 + 1
AAACUAUUUAUGUAUCCCCGCUAAUGGCCAGAGUUGGUCGGGGAAGCAGAAAGAAAACCAGGAAAAUUAAGCGAAAUGAAGUGGUUUGGG----GUAGGCA
...((((((.(((.(((((((((((.......))))).)))))).)))......((((((.....(((......)))....)))))).))----))))... ( -25.50)
>DroEre_CAF1 28515 100 + 1
AAACUAUUUACGAAUCCCCGCUAAUGGCCAGAGUUG-CCGGGGAACCAGAAAGAAAACCAGGAAAAUGAAGCGAAAUCAAGUGUUUUGGAUGGGGUAGGUA
....(((((((...((((((.((((.......))))-.)))))).(((.........((((((...(((.......)))....)))))).))).))))))) ( -22.20)
>consensus
AAACUAUUUAUGUAUCCCCGCUAAUGGCCAGAGUUGGUCGGGGAAGCAGAAAGAAAACCAGGAAAAUUAAGCGAAAUGAAGUGGUUUGGG____GUAGGCA
(((((((((..(..(((((((((((.......))))).))))))..).....(.....)...................))))))))).............. (-16.46 = -16.77 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:39 2006