Locus 2769

Sequence ID X_DroMel_CAF1
Location 7,462,156 – 7,462,259
Length 103
Max. P 0.608090
window4521

overview

Window 1

Location 7,462,156 – 7,462,259
Length 103
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 90.10
Mean single sequence MFE -24.71
Consensus MFE -17.65
Energy contribution -17.90
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.71
SVM decision value 0.15
SVM RNA-class probability 0.608090
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7462156 103 + 22224390
GA------------UCAUCAUCCGU-UGUUGUUGUGCCCAAAUAAUGCUUAAACAUAUGAAUUACUAUAUAGAUCAACUGCAAAUGUACAGCGACAACGAGAAGACAGAUCCCCAG
((------------((.((.(((((-(((((((((((.......(((......))).(((.(((.....))).))).........)))))))))))))).)).))..))))..... ( -25.80)
>DroSec_CAF1 210451 103 + 1
GA------------UCAUCAUCCGU-UGUUGUUGUGCCCAAAUAAUGCUUAAACAUAUGAAUUACUAUAUAGAUCAACUGCAAAUGUACAGCGACAACGAGAAGACAGAUCCAUAG
((------------((.((.(((((-(((((((((((.......(((......))).(((.(((.....))).))).........)))))))))))))).)).))..))))..... ( -25.80)
>DroEre_CAF1 226404 108 + 1
GAUCG----G---AUCAUCAUCCGU-UGUUGUUGUGCCCAAAUAAUGCUUAAACAUAUGAAUUACUAUAUAGAUCAACUGCAAAUGUACAGCGACAACGGGAAGACAGAGCAGCAG
.....----.---.......(((((-(((((((((((.......(((......))).(((.(((.....))).))).........))))))))))))))))............... ( -24.20)
>DroYak_CAF1 257644 116 + 1
GAUUGUGUGGAUCAUCAUCAUCCGUUUGUUGUUGUGCCCAAAUAAUGCUUAAACAUAUGAAUUACUAUAUAGAUCAACUGCAAAUGUACAGCGACAACGAGCAGACAGAUCAACAG
((((.(((((((.......))))((((((((((((..........(((.......((((........))))........)))........))))))))))))..)))))))..... ( -23.03)
>consensus
GA____________UCAUCAUCCGU_UGUUGUUGUGCCCAAAUAAUGCUUAAACAUAUGAAUUACUAUAUAGAUCAACUGCAAAUGUACAGCGACAACGAGAAGACAGAUCAACAG
.................((.(((((.(((((((((((.......(((......))).(((.(((.....))).))).........)))))))))))))).)).))........... (-17.65 = -17.90 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:45 2006