Locus 2768

Sequence ID X_DroMel_CAF1
Location 7,458,961 – 7,459,072
Length 111
Max. P 0.999335
window4520

overview

Window 0

Location 7,458,961 – 7,459,072
Length 111
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 94.78
Mean single sequence MFE -29.03
Consensus MFE -27.40
Energy contribution -27.44
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -2.08
Structure conservation index 0.94
SVM decision value 3.52
SVM RNA-class probability 0.999335
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7458961 111 + 22224390
-----CGAACCGAACCGUCUUACAAAAGCUGGCGAUGCCAAAAAUGAAGAAGCGGCAGUGGCAUCAGCGGAAAAGAAAAGAUUCGACGGCUUUUGUGUACAACUUAAUAACAACUA
-----...........((..((((((((((((((((((((....((......))....))))))).))......(((....)))..))))))))))).))................ ( -29.40)
>DroSec_CAF1 207266 111 + 1
-----CGAACCGAACCGUCUUACAAAAGCUGGCGAUGCCAAAAAUGAAGAAGCGGCAGUGGCAUCAGCGGAAAAGAAAAGAUUCGACGGCUUUUGUGUACAACUUAAUAACAACUA
-----...........((..((((((((((((((((((((....((......))....))))))).))......(((....)))..))))))))))).))................ ( -29.40)
>DroSim_CAF1 200390 111 + 1
-----CGAACCGAACCGUCUUACAAAAGCUGGCGAUGCCAAAAAUGAAGAAGCGGCAGUGGCAUCAGCGGAAAAGAAAAGAUUCGACGGCUUUUGUGUACAACUUAAUAACAACUA
-----...........((..((((((((((((((((((((....((......))....))))))).))......(((....)))..))))))))))).))................ ( -29.40)
>DroEre_CAF1 222925 111 + 1
-----CGUACCGAACCGUCUUACAAAAGCUGGCGAUGCCAAAAAUGAAGAAGCGGCCGUGGCAUCUGCGGAAAAGAAAAGAUUCGACGGCUUUUGUGUACAACUUAAUAACAACUA
-----.((((.((....))..(((((((((((((((((((....((......))....))))))).))......(((....)))..))))))))))))))................ ( -29.90)
>DroYak_CAF1 253970 116 + 1
CAAACCGAACUGAAUCCUCUUACAAAAGCUGGCGAUGCCAAAAAUGAAGAAGCGGCAUCGGCAUCGGUGGAAAAGAAAAGAUUCGACGGCUUUUGUGUACAACUUAAUAACAACUA
....................(((((((((((.(((((((..............))))))).)....((.(((.........))).))))))))))))................... ( -27.04)
>consensus
_____CGAACCGAACCGUCUUACAAAAGCUGGCGAUGCCAAAAAUGAAGAAGCGGCAGUGGCAUCAGCGGAAAAGAAAAGAUUCGACGGCUUUUGUGUACAACUUAAUAACAACUA
....................((((((((((((((((((((....((......))....))))))).))......(((....)))..)))))))))))................... (-27.40 = -27.44 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:44 2006