| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,455,508 – 7,455,617 |
| Length | 109 |
| Max. P | 0.906275 |
| Location | 7,455,508 – 7,455,617 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 87.99 |
| Mean single sequence MFE | -21.43 |
| Consensus MFE | -15.43 |
| Energy contribution | -15.30 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7455508 109 + 22224390 CUGAAAAAAAAUUUGUUUGCACAAAACAAAAACAACAAAUGCAAAGUGCAACAAGCAAGUAAUAAGUGAACAGUUUAUUGCUUGAAUAACUUUUUUUUUUUUUGAAGCG ..(((((((((((((((.((((.......................))))))))))(((((((((((.......)))))))))))..........)))))))))...... ( -20.00) >DroSec_CAF1 203903 103 + 1 CUGAAAAAAAAUUUGUUUGCACAAAACAAAAGCAA-AAAUGCAAAGUGCAACAAGCAAGUAAUAAAUGAACAGUUUAUUGCUUGAAUAACUUUUUUUUU-----AAGCG .((((((((((((((((.((((.........(((.-...)))...))))))))))((((((((((((.....))))))))))))......)))))))))-----).... ( -23.70) >DroEre_CAF1 219368 99 + 1 CUG-G-AAAAAUUUGUUUACACACAACAAAAGCAA-AAAUGCAAAGUGCAACAAGCAAGUAAUAAGUGAACAGUUUAUUGCUUGAAUAACUUUUUUUU-------AGCG (((-(-((((((((((((...........))))))-)..(((.....))).....(((((((((((.......))))))))))).......)))))))-------)).. ( -18.10) >DroYak_CAF1 250323 100 + 1 CUGAG-CAACAUUUGUUUGCACAAAACAAAGGCAA-UAAUGCAAAGUGCAACAAGCGAGUAAUAAGUGAACAGUUUAUUGCUUGAAUAACUUUUUUGC-------AUAG ....(-(....(((((((.....))))))).))..-..((((((((.........(((((((((((.......)))))))))))........))))))-------)).. ( -23.93) >consensus CUGAA_AAAAAUUUGUUUGCACAAAACAAAAGCAA_AAAUGCAAAGUGCAACAAGCAAGUAAUAAGUGAACAGUUUAUUGCUUGAAUAACUUUUUUUU_______AGCG ...........(((((((.....))))))).........(((.....))).....((((((((((((.....))))))))))))......................... (-15.43 = -15.30 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:43 2006