Locus 2764

Sequence ID X_DroMel_CAF1
Location 7,451,590 – 7,451,710
Length 120
Max. P 0.594643
window4513

overview

Window 3

Location 7,451,590 – 7,451,710
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.39
Mean single sequence MFE -18.86
Consensus MFE -12.09
Energy contribution -12.78
Covariance contribution 0.69
Combinations/Pair 1.11
Mean z-score -1.87
Structure conservation index 0.64
SVM decision value 0.12
SVM RNA-class probability 0.594643
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7451590 120 + 22224390
UUAUAAAGCAAAUCAAGAACAUAAAUAGCUUAAAAACAUAAAACAUAACAUAGAACAGGUAAGGUAAUCAACUUUUAAUAAGUUGGAUGUCUUGAUGGAAGUUCGAAAGUAUUUCGAAAA
...........(((((((.(((...((.((((...........................)))).)).(((((((.....))))))))))))))))).(((((.(....).)))))..... ( -20.03)
>DroSec_CAF1 199833 120 + 1
UUUAAAAGCAAAUCAAGAACAUAAACAACUUAAAAACAUAAAACAGAACAUAGAACAGGUAAGGUAAUCAAUUUUUAAUAAGUUGGAUGUCUUGAUGGAAGUUCGAAAAUAUUUCGAAAA
...........(((((((.(((...(((((((....(........)...........(((......))).........))))))).)))))))))).....((((((.....)))))).. ( -19.00)
>DroSim_CAF1 194753 120 + 1
UUUGAAAGCAAAUCAAGAACAUAAACAACUUAAAAACAUAAAACAGAACAUAGAACAGGUAAGGUAAUCAACUUUUAAUAAGUUGGAUGUCUUAAUGGAAGUUCGAAAAUAUUUCGAAAA
(((((((.........((((.(((.....))).......................((..((((..(.(((((((.....))))))).)..)))).))...)))).......))))))).. ( -17.79)
>DroYak_CAF1 245886 113 + 1
UUCGAAAGUAAAUUAAGAAUAUAAGCAACUUAAAAAAUA-GAG------AUAGAACAGGUAAGGGAAUCAACUUUUAAUAAAUUGCAUGUCUUCAAGCAAGUUCGAAAAAUUUUCGAAAA
(((((((((...(((((...........)))))......-...------...((((...((((((......)))))).....((((.((....)).)))))))).....))))))))).. ( -18.60)
>consensus
UUUGAAAGCAAAUCAAGAACAUAAACAACUUAAAAACAUAAAACAGAACAUAGAACAGGUAAGGUAAUCAACUUUUAAUAAGUUGGAUGUCUUGAUGGAAGUUCGAAAAUAUUUCGAAAA
...........(((((((.(((...(((((((...........(........)....(((......))).........))))))).)))))))))).....((((((.....)))))).. (-12.09 = -12.78 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:37 2006