Locus 2762

Sequence ID	X_DroMel_CAF1
Location	7,444,563 – 7,444,656
Length	93
Max. P	0.619626

overview

Window 0

Location	7,444,563 – 7,444,656
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	93.33
Mean single sequence MFE	-23.62
Consensus MFE	-18.76
Energy contribution	-19.60
Covariance contribution	0.84
Combinations/Pair	1.05
Mean z-score	-1.53
Structure conservation index	0.79
SVM decision value	0.18
SVM RNA-class probability	0.619626
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7444563 93 + 22224390
UUAAUAAUCCACCUGCCAUCUGCCCUGGCAACAAGAAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUGGA
.......((((...((((..((((.((....))................((((((......))))))))))..))))(((....)))..)))) ( -25.10)
>DroSec_CAF1 192990 93 + 1
UUAAUAAUCCACCUGCCAUCUGCCCUGGCAACAAGAAAUAAAGAUCUCGAGUCAAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUGGA
.......((((...((((..((((.((....))................((((((......))))))))))..))))(((....)))..)))) ( -25.40)
>DroSim_CAF1 187888 93 + 1
UUAAUAAUCCACCUGCCUUCUGCCCUGGCAACAAGAAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUGGA
........((((.((((...(((....)))...................((((((......)))))))))).))))((((....))))..... ( -23.20)
>DroEre_CAF1 207919 93 + 1
UUAAUAAUCCACCUGCCAUAUGCCCUGGCAACAAGAAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUGGA
.......((((...(((((.((((.((....))................((((((......)))))))))).)))))(((....)))..)))) ( -25.00)
>DroYak_CAF1 237411 81 + 1
UUAAUAAUCCACC------------UGGCAACCAGAAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUGGA
........(((((------------(((...)))).........((.(.((((((......)))))).).))))))((((....))))..... ( -19.40)
>consensus
UUAAUAAUCCACCUGCCAUCUGCCCUGGCAACAAGAAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUGGA
........((((.((((........((....))................((((((......)))))))))).))))((((....))))..... (-18.76 = -19.60 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:35 2006