Locus 2760

Sequence ID X_DroMel_CAF1
Location 7,441,517 – 7,441,614
Length 97
Max. P 0.739124
window4507

overview

Window 7

Location 7,441,517 – 7,441,614
Length 97
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 82.78
Mean single sequence MFE -22.57
Consensus MFE -14.02
Energy contribution -14.72
Covariance contribution 0.70
Combinations/Pair 1.06
Mean z-score -2.65
Structure conservation index 0.62
SVM decision value 0.44
SVM RNA-class probability 0.739124
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7441517 97 + 22224390
ACCCAUACCCAAUCCCAAUCCCAAGCCCAAAUCCUUUUUGUGCGAAAAUUUGCCA---GCUCGGAGAAUGGAAAGUUGGCAAAACAGCGAAAAACAU-UUG
...........................(((((..(((((((.......(((((((---(((............))))))))))...)))))))..))-))) ( -17.20)
>DroSec_CAF1 189598 97 + 1
ACCCAUACCCAAUCCCAAUCCCAAACCCAAAUCCUUUUUGUGCGAAAAUUUGCCA---GCUCUGAGAAUGGAAAGUUGGCAAAACAGCGCAAAACAU-UUG
...........................(((((...((((((((.....(((((((---(((((......)))..)))))))))...)))))))).))-))) ( -22.70)
>DroSim_CAF1 184887 97 + 1
ACCCAUACCCAAUCCCAAUCCCAAACCCAAAUCCUUUUUGUGCGAAAAUUUGCCA---GCUCUGAGAAUGGAAAGUUGGCAAAACAGCGCAAAACAU-UUG
...........................(((((...((((((((.....(((((((---(((((......)))..)))))))))...)))))))).))-))) ( -22.70)
>DroEre_CAF1 204767 91 + 1
AC------CCAAACCCAAUCCCAAACCCAAAUCCUUUUUGUGCGAAAAUUUGCCA---GCUCGCAGAAUGGAAAGUUGGCAAAACAGCGCAAAACAU-UUG
..------...................(((((...((((((((.....(((((((---(((..(......)..))))))))))...)))))))).))-))) ( -24.00)
>DroYak_CAF1 233922 97 + 1
ACCCAUAUCCAAACCCAAAUGCAAACCCAAAUCCUUUUUGUGCCAAAAUUUGCCA---GCUCGAAGAAUGGAAAGUUGGCAAAACAGCGCAAAACAU-UUG
...............((((((..............((((((((.....(((((((---(((............))))))))))...)))))))))))-))) ( -21.13)
>DroAna_CAF1 196009 90 + 1
CAUCGAACCCUUUC-----------CCCAGGGCCCUUCUGUGCGAAAAUCUGCCAACGGCCGGAAGAAAGGAAAGUUGGCAAAACAUCGCAAAUCAGAUUG
.......((((...-----------...))))....(((((((((.....(((((((..((........))...))))))).....)))))...))))... ( -27.70)
>consensus
ACCCAUACCCAAUCCCAAUCCCAAACCCAAAUCCUUUUUGUGCGAAAAUUUGCCA___GCUCGGAGAAUGGAAAGUUGGCAAAACAGCGCAAAACAU_UUG
...................................((((((((.....(((((((....((........)).....)))))))...))))))))....... (-14.02 = -14.72 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:32 2006