Locus 2756

Sequence ID X_DroMel_CAF1
Location 7,427,099 – 7,427,192
Length 93
Max. P 0.592720
window4500

overview

Window 0

Location 7,427,099 – 7,427,192
Length 93
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 86.09
Mean single sequence MFE -22.83
Consensus MFE -15.74
Energy contribution -15.74
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -3.17
Structure conservation index 0.69
SVM decision value 0.12
SVM RNA-class probability 0.592720
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7427099 93 + 22224390
UGUCAAAUGCAUUUCUGGCGACAUAAAAAUCUC-CUCGAAUCGUUAAAAAUGCAUCAUCAUCAAUUUUUGAUGCAUAUUUAAUGUAACGAGA-----------GG
((((....((.......)))))).......(((-.(((...(((((((.((((((((...........)))))))).)))))))...)))))-----------). ( -23.70)
>DroVir_CAF1 231574 98 + 1
UGUCAAAUGCAU-------GACAUAAAAAUCUUUGUCGAAUCGUUAAAAAUGCAUCAUCAUCAAUUUUUGAUGCAUAUUUAAUGUACGUGGACGAGUCAAUGCUG
........((((-------(((..........(((((.(..(((((((.((((((((...........)))))))).)))))))....).)))))))).)))).. ( -25.60)
>DroPse_CAF1 221584 93 + 1
UGUCAAAUGCAUUCCUGGCGACAUAAAAAUCUU-CUCGAAUCGUUAAAAAUGCAUCAUCAUCAAUUUUUGAUGCAUAUUUAAUGUAACAAGA-----------GG
((((....((.......)))))).......(((-((.(...(((((((.((((((((...........)))))))).)))))))...).)))-----------)) ( -20.90)
>DroYak_CAF1 217746 93 + 1
UGUCAAAUGCAUUUCUGGCGACAUAAAAAUCUC-CUCGAAUCGUUAAAAAUGCAUCAUCAUCAAUUUUUGAUGCAUAUUUAAUGUAACUAGA-----------GG
((((....((.......)))))).........(-(((....(((((((.((((((((...........)))))))).)))))))......))-----------)) ( -22.20)
>DroMoj_CAF1 266309 84 + 1
UGUCAAAUGCAC-------GACAUAAAAAUCUUUGUCGAAUCGUUAAAAAUGCAUCAUCAUCAAUUUUUGAUGCAUAUUUAAUGUACGA--------------CG
((((........-------))))...........((((...(((((((.((((((((...........)))))))).)))))))..)))--------------). ( -23.70)
>DroPer_CAF1 254901 93 + 1
UGUCAAAUGCAUUCCUGGGGACAUAAAAAUCUU-CUCGAAUCGUUAAAAAUGCAUCAUCAUCAAUUUUUGAUGCAUAUUUAAUGUAACAAGA-----------GG
...............((....)).......(((-((.(...(((((((.((((((((...........)))))))).)))))))...).)))-----------)) ( -20.90)
>consensus
UGUCAAAUGCAUU_CUGGCGACAUAAAAAUCUU_CUCGAAUCGUUAAAAAUGCAUCAUCAUCAAUUUUUGAUGCAUAUUUAAUGUAACAAGA___________GG
((((...............))))..................(((((((.((((((((...........)))))))).)))))))..................... (-15.74 = -15.74 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:26 2006