Locus 2755

Sequence ID X_DroMel_CAF1
Location 7,423,080 – 7,423,177
Length 97
Max. P 0.877338
window4499

overview

Window 9

Location 7,423,080 – 7,423,177
Length 97
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.30
Mean single sequence MFE -26.70
Consensus MFE -19.53
Energy contribution -19.92
Covariance contribution 0.39
Combinations/Pair 1.08
Mean z-score -1.55
Structure conservation index 0.73
SVM decision value 0.90
SVM RNA-class probability 0.877338
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7423080 97 + 22224390
--------------------GUACGCUCAUUGUAGUAAAUUUGACAGCAAUUGUUUUGUUUGACAUUUUGUCGUCUCU--GGCAAAAUGAUGAUGUCAAUAUGCAAAGCAGUUUUGCGG-
--------------------...(((..(((((.(((...((((((...((..(((((((.(((........)))...--)))))))..))..))))))..)))...)))))...))).- ( -27.10)
>DroPse_CAF1 216562 107 + 1
---------GCUUUCAGC--GUACGCUCAUUGUAGUAAAUUUGACAGCAAUUGUUUUGUUUGACAGUUUGUCGUCUCU--GCCAAAAUGAUGAUGUCAAUAUGCAAAGCAGUUCUCUGAU
---------(((.((((.--.(((((.....)).)))...)))).)))(((((((((((((((((.....(((((...--........)))))))))))...)))))))))))....... ( -25.90)
>DroGri_CAF1 211370 101 + 1
C----------UUUCAACGGCCGGGCUCAUUGUAGUAAAUUUGACAGCGAUUGUUUUGUUUGACAGUUUGUCGUCUC---GGCAAAAUGAUGAUGUCAAUAUGCAAAGCAGUCA------
(----------(.((((..((...((.....)).))....)))).)).(((((((((((((((((.(((((((...)---)))))).......))))))...))))))))))).------ ( -25.60)
>DroMoj_CAF1 260289 94 + 1
CCUUUU-----------------GGCUCAUUGUAGUAAAUUUGACAGCAAUUGUUUUGUUUGACAGCUUGUCGUCUC---GGCAAAAUGAUGAUGUCAAUAUGCAAAGCAGCCA------
.....(-----------------(((((.(((((......((((((...((..(((((((.(((........)))..---)))))))..))..))))))..))))).).)))))------ ( -28.30)
>DroAna_CAF1 178855 96 + 1
--------------------GGU--CGCAUUGUGCUAAAUUUGACAGCAAUUGUUUUGUUUGACAGUUUGUCGUCUCUCCGGCGAAAUGAUGAUGUCAAUAUGCAAAGCAGUUUCC-AG-
--------------------.((--((.(((......))).))))...((((((((((((((((((((..(((((.....)))))...)))..))))))...)))))))))))...-..- ( -25.50)
>DroPer_CAF1 249683 116 + 1
GCUGUGCCGGCUUUCAGC--GUACGCUCAUUGUAGUAAAUUUGACAGCAAUUGUUUUGUUUGACAGUUUGUCGUCUCU--GCCAAAAUGAUGAUGUCAAUAUGCAAAGCAGUUCUCUGAU
((((...))))..((((.--(.(((((..(((((......((((((...((..(((((...(((........)))...--..)))))..))..))))))..)))))))).)).).)))). ( -27.80)
>consensus
____________________GUACGCUCAUUGUAGUAAAUUUGACAGCAAUUGUUUUGUUUGACAGUUUGUCGUCUCU__GGCAAAAUGAUGAUGUCAAUAUGCAAAGCAGUUAUC_G__
........................(((..(((((......((((((...((..(((((((.(((........))).....)))))))..))..))))))..))))))))........... (-19.53 = -19.92 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:25 2006