| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,422,023 – 7,422,114 |
| Length | 91 |
| Max. P | 0.783576 |
| Location | 7,422,023 – 7,422,114 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 75.78 |
| Mean single sequence MFE | -17.30 |
| Consensus MFE | -14.33 |
| Energy contribution | -14.67 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.783576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7422023 91 - 22224390 AGAUCUUCAAUCCGA---------AAAAUCAGGAAUCAGGAAAAAACCCACCUGUGUGGCAACAUGUGACGGAGGUCCCAAAAGGUUUUUCAAUUACAAA .............((---------((((((........((.......))((((.(((.((.....)).))).)))).......))))))))......... ( -19.60) >DroSec_CAF1 170830 89 - 1 AGAUCUUCAAUCCCUUUCAUUUAGAAUAGAUUUAAUCAGGAAAAAACCCACCUGUGUUGCAACAUGUGACGGAGGUCCCAU-----------GUUUCAAA .(((....((((...(((.....)))..))))..)))..((((......((((.(((..(.....)..))).)))).....-----------.))))... ( -16.90) >DroSim_CAF1 172765 87 - 1 AGAUCUUCAA--CCUUUCAUUUAGAAUAGAUUUAAUCAGGAAAAAACCCACCUGUGUUGCAAUAUGUGACGGAGGUCCCAU-----------GUUACAAA .(((((((..--........................((((..........)))).((..(.....)..)))))))))....-----------........ ( -15.40) >consensus AGAUCUUCAAUCCCUUUCAUUUAGAAUAGAUUUAAUCAGGAAAAAACCCACCUGUGUUGCAACAUGUGACGGAGGUCCCAU___________GUUACAAA .(((((((............................((((..........)))).(((((.....))))))))))))....................... (-14.33 = -14.67 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:24 2006