| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,416,549 – 7,416,639 |
| Length | 90 |
| Max. P | 0.533399 |
| Location | 7,416,549 – 7,416,639 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 65.64 |
| Mean single sequence MFE | -17.79 |
| Consensus MFE | -8.45 |
| Energy contribution | -8.57 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.47 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.533399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7416549 90 + 22224390 AAA--------ACGCAAGUGCAAC------AAAAUUUGAUCUACAUUUUUCUACCAUGCAAAUGUAGGAAUUCGAUCUUAAA----------AUCAUUUGCAAUAUUCUGUAAG ...--------..(((((((....------.....(((((((((((((..(......).)))))))))...)))).......----------..)))))))............. ( -15.97) >DroSim_CAF1 166963 100 + 1 AAA--------ACACAAGUGCAAC------AAAAUUUCAUCUACAUUUGCCUAGCAGGUAAAUGUAAGAAUUGGAUCUUAAAAUAUAUGUUAAUCAUUAGCAAUAUUAUGUAAG ...--------.......((((..------.....((((((((((((((((.....))))))))).)))..))))......(((((.(((((.....)))))))))).)))).. ( -18.80) >DroEre_CAF1 179836 106 + 1 AAAAAAAAAAAAGACAAGUGCAACUGGCGCAGAAUGUGAUCUACAUUUGUCUGGCAAGCAAGUGCAGGAAUUCAA------AAAA--UACCAAUCAGUGGCAGUAAGAUGUAAA ................(.(((.((((((.((((..(((.....)))...))))))..((....)).((.(((...------..))--).))...)))).))).).......... ( -18.60) >consensus AAA________ACACAAGUGCAAC______AAAAUUUGAUCUACAUUUGUCUAGCAAGCAAAUGUAGGAAUUCGAUCUUAAAA_A__U___AAUCAUUAGCAAUAUUAUGUAAG ...................................(((((((((((((((.......)))))))))))...))))........................(((......)))... ( -8.45 = -8.57 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:20 2006