Locus 2750

Sequence ID X_DroMel_CAF1
Location 7,415,317 – 7,415,407
Length 90
Max. P 0.627644
window4492

overview

Window 2

Location 7,415,317 – 7,415,407
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 92.59
Mean single sequence MFE -28.40
Consensus MFE -25.49
Energy contribution -25.93
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.78
Structure conservation index 0.90
SVM decision value 0.19
SVM RNA-class probability 0.627644
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7415317 90 - 22224390
CUGCAUCUAGUAUGAUGUGGUGCCUGCCACUGGUGGUGGUGGUUGUUUCCUUCCUUUUUAACGGGAUGAAUGUCCUGUUGGUGCGGGUCA
(..((((......))))..).(((.(((((.....)))))))).........(((..((((((((((....))))))))))...)))... ( -30.10)
>DroSec_CAF1 163971 90 - 1
CUGCAUCUAGUAUGAUGUGGUGCCUGCCACUGGUGGUGGUGGUUGUUUCCUUCCUUUUUAACGGAAUGAAUGUCCUGUUGGUGCGGGUCA
(..((((......))))..).(((.(((((.....))))))))...(((.((((........)))).)))((.(((((....))))).)) ( -28.70)
>DroEre_CAF1 178479 83 - 1
CUGCAUCUAGUAUGAUGUGGUA----CCACUGGU---GGUGGUUGUUUCCUUCCUUUUUAGCGGGAUGAAUGUCCUGUUGGUGCGGGUCA
(..((((......))))..).(----((((....---.))))).........(((..((((((((((....))))))))))...)))... ( -26.40)
>consensus
CUGCAUCUAGUAUGAUGUGGUGCCUGCCACUGGUGGUGGUGGUUGUUUCCUUCCUUUUUAACGGGAUGAAUGUCCUGUUGGUGCGGGUCA
(((((((...........((.....((((((......)))))).....)).........((((((((....))))))))))))))).... (-25.49 = -25.93 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:19 2006