Locus 2749

Sequence ID X_DroMel_CAF1
Location 7,409,801 – 7,409,894
Length 93
Max. P 0.702568
window4491

overview

Window 1

Location 7,409,801 – 7,409,894
Length 93
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 91.45
Mean single sequence MFE -11.32
Consensus MFE -9.52
Energy contribution -9.30
Covariance contribution -0.22
Combinations/Pair 1.07
Mean z-score -1.84
Structure conservation index 0.84
SVM decision value 0.36
SVM RNA-class probability 0.702568
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7409801 93 - 22224390
-GCGGACAACAAUAAAAA---CAAGCCAAAGGA-----AAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCU
-..(((......((((..---.........((.-----.....))...(((((......))))).)))).........(((((((....)))))))..))). ( -13.00)
>DroGri_CAF1 198645 93 - 1
CACAAUAAAU-AAAAAAA---CAAGCCAAAGAA-----AAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCU
..........-.......---........(((.-----..........(((((......)))))..............(((((((....))))))))))... (  -9.60)
>DroWil_CAF1 168686 101 - 1
-ACGGACAAUAAAAAAAACAACAAGCCAAAGAAAAAAAAAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCU
-..(((..........................................(((((......)))))..............(((((((....)))))))..))). ( -12.00)
>DroYak_CAF1 197278 93 - 1
-ACGGACAACAAUAAAAA---CAAGCCAAAGGA-----AAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCU
-..(((......((((..---.........((.-----.....))...(((((......))))).)))).........(((((((....)))))))..))). ( -13.00)
>DroMoj_CAF1 246019 92 - 1
-AUAAAAAAC-AAAAACA---CAAGCCAAAGAA-----AAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCU
-.........-.......---........(((.-----..........(((((......)))))..............(((((((....))))))))))... (  -9.60)
>DroAna_CAF1 165529 93 - 1
-ACAGACAACAAUAAAAA---CAAGCCAAAGAA-----AAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCU
-..((((...........---............-----..........(((((......)))))...............((((((....))))))))))... ( -10.70)
>consensus
_ACAGACAACAAAAAAAA___CAAGCCAAAGAA_____AAACCCCAAAGUUAACCAACAUUAACAUUUAAUCGAACCUCAUGUUCAGUAGAGCAUGUCUCCU
.............................(((................(((((......)))))..............(((((((....))))))))))... ( -9.52 =  -9.30 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:18 2006