Locus 2745

Sequence ID X_DroMel_CAF1
Location 7,384,234 – 7,384,326
Length 92
Max. P 0.845327
window4486

overview

Window 6

Location 7,384,234 – 7,384,326
Length 92
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 77.39
Mean single sequence MFE -22.90
Consensus MFE -17.44
Energy contribution -17.22
Covariance contribution -0.22
Combinations/Pair 1.22
Mean z-score -1.29
Structure conservation index 0.76
SVM decision value 0.77
SVM RNA-class probability 0.845327
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7384234 92 + 22224390
GCGGCGGAGCGUGCCAUCAAUAUGGCAAACGACGACAAACGCA--AACUUAGAAACGACUGAGUGAAUCGAC-GAUGGCAACUACUG-------CGGCGAAG
((.((((((..(((((((....((.....))........((..--.((((((......))))))....))..-))))))).)).)))-------).)).... ( -28.40)
>DroVir_CAF1 177338 78 + 1
GCGCCGGAGCGUGCCAUCAAUAUGGCAAACGACGACAAACGCA--AACUUAGAAACGACUGAGUGACUC--------UCAAC--------------GCGACG
(((.((..(..((((((....))))))..)..)).........--.((((((......)))))).....--------....)--------------)).... ( -20.00)
>DroWil_CAF1 144373 90 + 1
GUGGUAGAGCGUGCCAUCAAUAUGGCAAAUGACGACAAACGCAAAAACUUAGAAACGACUGAGUGAGUUAAGCCA---CAGC--CAA-------CAAAUUCG
(((((...(((((((((....)))))...((....)).))))....((((((......)))))).......))))---)...--...-------........ ( -22.60)
>DroYak_CAF1 168978 99 + 1
GCGGCGGAGCGUGCCAUCAAUAUGGCAAACGACGACAAACGCA--AACUUAGAAACGACUGAGUGAAUCGAC-GAUGGCAACUACUACUGCGUACGGCGACG
((((..(((..(((((((....((.....))........((..--.((((((......))))))....))..-))))))).)).)..))))...((....)) ( -26.40)
>DroMoj_CAF1 212369 80 + 1
GCGCCGGAGCGUGCCAUCAAUAUGGCAAACGACGACAAACGCA--AAUUUAGAAACGACUGAGUGACUCU------CUCAAC--------------GCGACG
(((..((((.(((((((....))))).................--.((((((......)))))).)).))------))...)--------------)).... ( -17.90)
>DroAna_CAF1 143529 77 + 1
GCGGCGGAGCGUGCCAUCAAUACGGCAAACGACGACAAACGCA--AACUUAGAAACGUCUGAGUGAAUCGAC-GA----------------------CGAUG
(((.((..(..((((........))))..)..)).....))).--.(((((((....)))))))..((((..-..----------------------)))). ( -22.10)
>consensus
GCGGCGGAGCGUGCCAUCAAUAUGGCAAACGACGACAAACGCA__AACUUAGAAACGACUGAGUGAAUCGAC_GA___CAAC______________GCGACG
(((.((..(..((((((....))))))..)..)).....)))....((((((......))))))...................................... (-17.44 = -17.22 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:14 2006