Locus 2744

Sequence ID X_DroMel_CAF1
Location 7,381,787 – 7,381,901
Length 114
Max. P 0.722929
window4485

overview

Window 5

Location 7,381,787 – 7,381,901
Length 114
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.28
Mean single sequence MFE -37.25
Consensus MFE -15.25
Energy contribution -15.45
Covariance contribution 0.20
Combinations/Pair 1.33
Mean z-score -1.98
Structure conservation index 0.41
SVM decision value 0.40
SVM RNA-class probability 0.722929
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7381787 114 + 22224390
AGCAAAACGGGUGGUUUGAUUAUCUCCGGAAAGGGAAAUUUGCUUAAAUUCAUCAGCAUUUCCUUGCCGGUAGUCUCUAAUUUGAA------UUCUUCACCCCGCACACGCCAGUCUCCA
........((((((...(((((...((((.(((((((...((((..........))))))))))).)))))))))((......)).------....)))))).((....))......... ( -27.10)
>DroSec_CAF1 130668 114 + 1
AGCAAAACGGGCGGUUUGAUUAUCUCCGGAUAGGGAAAUUUGCUUAGAUUCAUCAGCAUUUCCUUGCCGGUAGUCUCUAUAUUAAA------UUCUUCACCCCGCACAUGCCAGUCUCCA
.(((......((((..(((....((((((.((((((((..((((.(......).)))))))))))))))).)).............------....)))..))))...)))......... ( -27.80)
>DroSim_CAF1 130290 114 + 1
AGCAAAACGGGCGGUUUGAUUAUCUCCGGAUAGGGAAAUUUGCUUAGAUUCAUCAGCAUUUCCUUGCCGGUAGUCUCUAUAUUAAA------UUCUUCACCCCGCACAUGCCAGUCUCCA
.(((......((((..(((....((((((.((((((((..((((.(......).)))))))))))))))).)).............------....)))..))))...)))......... ( -27.80)
>DroEre_CAF1 143413 114 + 1
AACAGAACAGGCGGAUGGAUUAGGUCCGGAUAGGGAAAUUUGCUGAGAUUCAUCAGCAUUUCCUUGCCGGUAGUCUGGAAAUCGAA------UUCUCCACCGGGCAAACACCAGUCCCCA
.........((.((((((.....((((((.((((((((..((((((......))))))))))))))((((....))))........------.......)))))).....))).))))). ( -41.20)
>DroYak_CAF1 166427 114 + 1
AACAAAACGGGCGGAUGUAUGAUCUCCGGAUAGGGAAACUUGCUUAGAUUCAUCAGCAUUUCCCUGCCGGUCGUUUGGAAAUCGAA------UUUUCCACCCGUCAAACGCCAGUCGCCA
.........(((((.(((.(((...((((.((((((((..((((.(......).)))))))))))))))).((..((((((.....------.))))))..))))).)))....))))). ( -38.70)
>DroAna_CAF1 141276 120 + 1
ACGAGGGGGGGUGGACGGAAAAUGUCCGGGUACGGCUCGGACUUCAGUUUGGCCAUCAGGUCGAGGGCGCUCUGGUGGAAGUCCCAGCUGGUCUUCCCGUCCGGCAAUCGCCACUCCCCG
.....((((((((((((((.....)))(((..(((((.(((((((..(((((((....)))))))..(((....)))))))))).))))).....)))))))(((....)))))))))). ( -60.90)
>consensus
AGCAAAACGGGCGGAUGGAUUAUCUCCGGAUAGGGAAAUUUGCUUAGAUUCAUCAGCAUUUCCUUGCCGGUAGUCUCGAAAUCGAA______UUCUCCACCCCGCAAACGCCAGUCUCCA
......((.((((............((((.((((((((..((((..........))))))))))))))))((.....)).............................)))).))..... (-15.25 = -15.45 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:13 2006