| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 917,428 – 917,526 |
| Length | 98 |
| Max. P | 0.950576 |
| Location | 917,428 – 917,526 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 75.55 |
| Mean single sequence MFE | -25.44 |
| Consensus MFE | -10.72 |
| Energy contribution | -10.68 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.42 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.950576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 917428 98 + 22224390 CCAGGAUAUUGGCUAAAAAGGAAGAUUUGGC---ACAGGGGAGCCUUCUUUCCCGUUGCCA------UUUUCCAUUUUCCAUUUCCCAUUUCGCAUUUCGCAUUUUC ...(((...(((..((((.((((((..((((---(..((((((.....))))))..)))))------)))))).)))))))..)))......((.....))...... ( -27.90) >DroSec_CAF1 8919 84 + 1 CCAGGAUUUUGGCUAAACAGGAAGAUUUGGC---ACAGGAGAGCCUUCUUCCCCGUUGCCA------UUUUCCAUUUCCC--------------AUUUCGCAUUUUC ...(((...((((..(((.((((((...(((---........))).))))))..)))))))------...))).......--------------............. ( -24.20) >DroSim_CAF1 9064 84 + 1 CCAGGAUUUUGGCUAAAAAGGAAGAUUUGGC---ACAGGGGAGCCUUCUUUCCCGUUGCCA------UUUUCCAUUUCCC--------------AUUUCGCAUUUUC ...(((...(((...(((.((((((..((((---(..((((((.....))))))..)))))------)))))).))).))--------------).)))........ ( -23.20) >DroEre_CAF1 10217 98 + 1 CCAGGAUGUGGGCUAAAAAGGAAGAUUUGUA---ACAGGGCAUCCUUCUUUCCCGUGGUCA------UUUUCCAUUUCCCAUUUCCCAUCUCCCAGCUGGCACUUGG (((((.(((.((((...(((((((...(((.---.....)))..)))))))...((((...------....))))...................)))).)))))))) ( -23.70) >DroYak_CAF1 9471 107 + 1 CCAGGAUAUGGGCUAAAAAGGAUGAUUUGGAACAACAGGCCAUCCUUCUUUCCCGUUACCCCGUAACGUUGCCAUUUUCCAUUUCCCAUUUCCCAGCUGGCACUUGG (((((....(((..((.(((((((..(((......)))..))))))).)).)))(((((...)))))..(((((.......................)))))))))) ( -28.20) >consensus CCAGGAUAUUGGCUAAAAAGGAAGAUUUGGC___ACAGGGGAGCCUUCUUUCCCGUUGCCA______UUUUCCAUUUCCCAUUUCCCAU_UC_CAUUUCGCAUUUUC ...(((...((((......((((((...(((...........))).)))))).....)))).........))).................................. (-10.72 = -10.68 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:36 2006