| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,357,542 – 7,357,654 |
| Length | 112 |
| Max. P | 0.578155 |
| Location | 7,357,542 – 7,357,654 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 75.42 |
| Mean single sequence MFE | -31.04 |
| Consensus MFE | -16.51 |
| Energy contribution | -15.99 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578155 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7357542 112 - 22224390 CAGGAACCAAAGCUUGAUCCCAAUGCCCAUUUCGGUGGGCAACUGCACACAACCCAAGGUAAUGGGCCAGGGCUUCGACACGCCCUUUCUAUACCCCGAAUUUAUUUCCAAA ..((((..(((..(((.......(((((((....)))))))................((((.((((..(((((........))))).)))))))).))).)))..))))... ( -30.30) >DroSec_CAF1 106350 112 - 1 CAGAAACCAAAGCUUGAUCCCAACGCCUAUUUCAGUGGGCAACUGCACACAACCCAAGCUAAUGGGCCAGGGGUUCGACACGCCCUUUCUAUACCCUGAUUUUAUUUCACAA ..(((((((.((((((........((((((....))))))...((....))...))))))..)))..(((((.....................)))))......)))).... ( -26.00) >DroSim_CAF1 106243 111 - 1 CAGAAACCAAAGCUUGAUCCCAACGCCUAUUUCAGUGGGCAACUGCACACAACCCAAGCUAAUGGGCCAGGGCUUCGACACGCCCUUUCUAUACCCUGAUU-UAUUUCAGAA .((((.(((.((((((........((((((....))))))...((....))...))))))..)))...(((((........))))))))).....((((..-....)))).. ( -30.20) >DroEre_CAF1 117658 112 - 1 CAGGAACCACAGCUCGAUGCCACUGCCAAUCACGAUGGGCAAUUGCACACCACCCAAGGUCAUAGGUCAGGGCUACGAUGCGCCCUUUCUGUACCCCAAUUUUAUUUCAAAA ((((((.....(((((..(((.(((((.((.((..((((.............))))..)).)).)).))))))..))).))....))))))..................... ( -26.12) >DroYak_CAF1 138497 112 - 1 CAGGAACCACAGCUCGAUCCCGCUGCCCAUCACGGUGGGCAACUGCACACCACCCAAGGUCAUAGGUCAGGGCUUCGAUGCGCCCUUUCUCUACCCCGAGUUUGUGGCCAAA ..((..(((((((((((((..(((((((((....)))))))...))..(((......)))....))))(((((........)))))...........))).))))))))... ( -39.70) >DroAna_CAF1 116960 90 - 1 C---------------------AUUCCGGUCGCGGUGGGCCACUGCACGCCCCCCAAGCUGGCGGGACAGGGCUUCGACUCGCCCUUCCUCUACCCGGAGUUCAUCGGCAA- .---------------------(((((((..((((((...)))))).((((.........))))(((.(((((........)))))))).....)))))))..........- ( -33.90) >consensus CAGGAACCAAAGCUUGAUCCCAAUGCCCAUCUCGGUGGGCAACUGCACACAACCCAAGCUAAUGGGCCAGGGCUUCGACACGCCCUUUCUAUACCCCGAUUUUAUUUCAAAA ........................(((.(((....((((.............))))....))).))).(((((........))))).......................... (-16.51 = -15.99 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:03 2006