| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,353,699 – 7,353,790 |
| Length | 91 |
| Max. P | 0.820744 |
| Location | 7,353,699 – 7,353,790 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 81.81 |
| Mean single sequence MFE | -16.40 |
| Consensus MFE | -12.33 |
| Energy contribution | -12.33 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7353699 91 - 22224390 ----AAAUGGAAAAUUUAAAAU------AAGCAAUGCGUGGCAG-CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUC ----..................------.((((..((((((...-...............))))))((((..(((((((....)))))))..)))).)))). ( -16.27) >DroGri_CAF1 131234 90 - 1 ----------UAGCAUUGAAAUGACA-ACGGCAAAACGGAGCAU-CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUU ----------.((((((((..(((..-.((......)).....)-))..)))).............((((..(((((((....)))))))..)))).)))). ( -16.00) >DroSim_CAF1 102092 91 - 1 ----AAAUGGGAAAUUUAA-AU------AGGCAAUGCGUGGCAGCCAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUC ----...............-..------.......(((((((((((....................)))...(((((((....)))))))..)))))))).. ( -18.45) >DroEre_CAF1 113856 91 - 1 ----AAAUGGGAAAUUUAAAAU------AAGCAAAGCGUGGCAG-CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUC ----..................------.((((..((((((...-...............))))))((((..(((((((....)))))))..)))).)))). ( -16.47) >DroWil_CAF1 113496 87 - 1 ----AGAAAGGAAAACAAGAAU------AAGCAAA----AGCAU-CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUU ----........(((((.....------..((...----.))..-.....................((((..(((((((....)))))))..)))).))))) ( -14.10) >DroMoj_CAF1 171233 101 - 1 CGGCAAAUGAUAACAUUGAAAUGGCAAAUGGCAAAACGGGGCAU-CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUU .((((..((((....((((....((...((......))..)).)-)))))))..............((((..(((((((....)))))))..)))).)))). ( -17.10) >consensus ____AAAUGGGAAAAUUAAAAU______AAGCAAAGCGUGGCAG_CAAAUCAAAAAACAAUUACGCGGCAAAUGACAUUAUCAAAUGUCAAAUGUCAUGUUC ..............................((........))....................(((.((((..(((((((....)))))))..)))).))).. (-12.33 = -12.33 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:02 2006