Locus 2735

Sequence ID X_DroMel_CAF1
Location 7,346,373 – 7,346,477
Length 104
Max. P 0.745970
window4472

overview

Window 2

Location 7,346,373 – 7,346,477
Length 104
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 92.95
Mean single sequence MFE -23.50
Consensus MFE -20.55
Energy contribution -21.55
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.11
Structure conservation index 0.87
SVM decision value 0.46
SVM RNA-class probability 0.745970
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7346373 104 + 22224390
AAUAAUAUAAACUCUCCUUUGAUAAAGAAAUAUGGUAAGUUGUCAAUAAAUAGCACGCGUUGCUCUUCUCAUAAUACUUUUGCUAUAUUCUUUCAGGAGAAGCA
............((((((.....((((((.((((((((((...........((((.....))))...........)))..))))))))))))).)))))).... ( -19.45)
>DroSec_CAF1 95021 104 + 1
AAUGAUAUAAGCUCUCCAUUGAUCAAGUAAUAUGGUAAGUUGUCAAUAACUAGCUCGCGUUGCUCAUCUCAUAAGACUUUUGCUAUAUUAUUUCAGGAGAAGCA
..........(((((((..(((...((((((((((((((..(((.......(((.......)))..........))).))))))))))))))))))))).))). ( -25.53)
>DroSim_CAF1 94898 104 + 1
AAUGAUAUAAGCUCUCCAUUGAUCAAGUAAUAUGGUAAGUUGUCAAUUAAUAGCUCGCGUUGCUCAUCUCAUAAGACUUUUGCUAUAUUAUUUCAGGAGAAGCA
..........(((((((..(((...((((((((((((((..(((.......(((.......)))..........))).))))))))))))))))))))).))). ( -25.53)
>consensus
AAUGAUAUAAGCUCUCCAUUGAUCAAGUAAUAUGGUAAGUUGUCAAUAAAUAGCUCGCGUUGCUCAUCUCAUAAGACUUUUGCUAUAUUAUUUCAGGAGAAGCA
..........(((((((..(((...((((((((((((((((..........(((.......)))..........))))..))))))))))))))))))).))). (-20.55 = -21.55 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:01 2006