Locus 2733

Sequence ID X_DroMel_CAF1
Location 7,333,875 – 7,333,970
Length 95
Max. P 0.735522
window4470

overview

Window 0

Location 7,333,875 – 7,333,970
Length 95
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 68.05
Mean single sequence MFE -33.43
Consensus MFE -9.88
Energy contribution -10.22
Covariance contribution 0.34
Combinations/Pair 1.38
Mean z-score -2.05
Structure conservation index 0.30
SVM decision value 0.44
SVM RNA-class probability 0.735522
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7333875 95 - 22224390
GUCGUC---AAAG-----GG---------GACGAAAUAUGGGGCCGAAGGACCCCCAUUUCAGCCAGCACCCCGCUU--AACCACAUUCAUAUGGUGCAGACACCCCGUCAUAU
......---...(-----((---------(..(((((..((((.(....).)))).))))).....(((((......--..............))))).....))))....... ( -27.55)
>DroPse_CAF1 119513 86 - 1
GCCGCU---ACUG-----GGGGGGC---------------GUGCCGUCUGAUCCC-GGGUCGGUCUGUUUCUGUUCC--AUCUAUAGUCAUAUGGUGGAGAC--CCUCACAGAU
......---.(((-----(((((((---------------(.((((((((....)-))).)))).))).....((((--(.(((((....)))))))))).)--)))).))).. ( -31.00)
>DroSec_CAF1 82593 95 - 1
GUCGUC---AAAG-----GG---------GACGAAAUAUGGGACCGAAGGACCCCCAUUUCGGCCAGCACCCCCCUU--AACCACAUUCAUAUGGUGCAGACACCCCGCCAUAU
((.((.---.(((-----((---------(.((((((..(((.((...)).)))..))))))(....)...))))))--.)).))....((((((((.........)))))))) ( -27.30)
>DroSim_CAF1 82651 95 - 1
GUCGUC---AAAG-----GG---------GACGAAAUAUGGGGCCGAAGGACCCCCAUUUCGGCCAGCACCCCCCUU--AACCACAUUCAUAUGGUGCAGACACCCCGCCAUAU
.(((((---....-----..---------))))).((((((((((((((........)))))))).(((((......--..............)))))..........)))))) ( -31.25)
>DroEre_CAF1 92647 103 - 1
GUCGUCCUCGAAGGAGUGGG-GGGCGGGGGGCGAAAUAUGGGGCCGAAGGACCCCCAUUUCAGC-------CCCCU---AACCGCUUUCAUAUGGCGCAGACACCCCGCCAUAU
......(((....)))..(.-.(((((((((((((((..((((.(....).)))).))))).))-------)))..---..)))))..)((((((((.........)))))))) ( -47.70)
>DroYak_CAF1 110634 93 - 1
GUCGUC---AAAG-----GG-GGAAGG------------GGGGUCGAAGGACCUCCAUUUCAGCAAACCCCCCCCUUGAAACCACAUUCAUAUGGCGCAGACAACCCGCCAUAU
((.((.---.(((-----((-((...(------------((((((....))))))).(((....)))...)))))))...)).))....((((((((.........)))))))) ( -35.80)
>consensus
GUCGUC___AAAG_____GG_________GACGAAAUAUGGGGCCGAAGGACCCCCAUUUCAGCCAGCACCCCCCUU__AACCACAUUCAUAUGGUGCAGACACCCCGCCAUAU
.......................................((((.(....).))))..................................((((((((.........)))))))) ( -9.88 = -10.22 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:00 2006